RetrogeneDB ID: | retro_ptro_1909 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 3:97080242..97080977(-) | ||
Located in intron of: | ENSPTRG00000015132 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBBP7 | ||
Ensembl ID: | ENSPTRG00000021702 | ||
Aliases: | None | ||
Description: | retinoblastoma binding protein 7 [Source:HGNC Symbol;Acc:9890] |
Percent Identity: | 83.4 % |
Parental protein coverage: | 58.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | THTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHI |
THT.DEQ.HLV.A.V..PNDDA.FDASH.DS.KGEFGGFGSV.GKIE.EIKINHEGEVNRARYMPQNP.I | |
Retrocopy | THTLDEQKHLVIASVQLPNDDAHFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCI |
Parental | IATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINA |
I.TKTPSSDVLV.DYTKHP.KPD.SG.CN.DLRL.GHQK.GYGLSW..NLSGHLLSASDDHT..LWDI.A | |
Retrocopy | ITTKTPSSDVLVLDYTKHP-KPDLSGDCNSDLRLHGHQKKGYGLSW-PNLSGHLLSASDDHTIYLWDISA |
Parental | GPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCL |
.PKEG..VDAK.IFTGH..VVEDV.WHL.H.SLFGSVAD.QKLMIWDT.SN.TSKPSH.VDAHTAEVNCL | |
Retrocopy | VPKEGNVVDAKTIFTGHTVVVEDVSWHLFHKSLFGSVADHQKLMIWDTCSNNTSKPSHSVDAHTAEVNCL |
Parental | SFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESH |
SFNPYSEFILATGSADKTVALWDLRNLKL.LH..ESH | |
Retrocopy | SFNPYSEFILATGSADKTVALWDLRNLKLMLHSSESH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .38 RPM | 36 .30 RPM |
SRP007412_cerebellum | 0 .43 RPM | 32 .34 RPM |
SRP007412_heart | 0 .26 RPM | 45 .09 RPM |
SRP007412_kidney | 0 .37 RPM | 48 .41 RPM |
SRP007412_liver | 0 .07 RPM | 28 .35 RPM |
SRP007412_testis | 0 .53 RPM | 63 .76 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2814 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002820 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031353 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000683 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014995 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000007189 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001711 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021702 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000005157 | 1 retrocopy | |
Sorex araneus | ENSSARG00000008079 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000010151 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002385 | 4 retrocopies |