Parental gene:

RBBP7, ENSOCUG00000000683

Aliases:None
Description:retinoblastoma binding protein 7 [Source:HGNC Symbol;Acc:9890]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:X:2727071..2753518(-)


>ENSOCUG00000000683
ATGGCGAGTAAAGAGATGTTTGAAGATACTGTGGAGGAGCGTGTCATCAACGAAGAGTATAAAATCTGGAAGAAGAATAC
ACCGTTTTTATATGACCTGGTTATGACCCATGCTCTTCAGTGGCCCAGTCTTACGGTTCAGTGGCTTCCTGAAGTGACTA
AACCCGAAGGAAAAGATTATGCCCTTCATTGGCTAGTCCTGGGGACTCATACATCTGATGAACAGAATCATCTGGTGGTT
GCTCGAGTACATATTCCCAATGATGATGCACAGTTTGATGCTTCCCACTGTGATAGTGACAAGGGTGAATTTGGTGGCTT
TGGTTCTGTAACAGGAAAAATTGAATGTGAAATTAAAATTAATCACGAAGGAGAAGTAAATCGTGCCCGTTACATGCCAC
AGAATCCTCATATCATTGCTACAAAAACACCATCTTCTGATGTCTTGGTTTTTGACTATACAAAACACCCTGCTAAACCA
GACCCAAGTGGAGAATGCAATCCTGATCTTAGGTTAAGAGGTCACCAAAAGGAAGGCTATGGTCTTTCCTGGAATTCTAA
TTTGAGTGGACATCTCCTAAGTGCATCTGATGACCATACTGTCTGTCTGTGGGATATAAATGCAGGACCAAAGGAAGGCA
AAATTGTGGATGCTAAAGCAATCTTTACTGGCCACTCGGCTGTTGTGGAGGATGTGGCCTGGCACCTGCTCCATGAGTCG
TTGTTTGGATCTGTTGCTGATGATCAGAAACTTATGATATGGGATACCAGGTCCAATACCACCTCCAAGCCGAGTCACTT
GGTGGATGCACATACCGCCGAGGTCAACTGCCTCTCGTTCAATCCCTACAGCGAGTTCATTCTAGCAACTGGCTCTGCGG
ATAAGACTGTAGCTTTATGGGATCTGCGTAACTTGAAATTAAAACTTCATACCTTCGAATCTCATAAGGATGAAATTTTC
CAGGTCCACTGGTCTCCACATAATGAAACTATTCTGGCTTCAAGTGGTACTGATCGCCGCCTGAATGTATGGGATTTAAG
TAAAATTGGAGAAGAACAATCAGCAGAAGATGCAGAAGATGGGCCTCCGGAACTCCTGTTTATTCATGGAGGACACACTG
CCAAGATCTCAGATTTTAGTTGGAACCCCAATGAGCCTTGGGTCATCTGCTCCGTGTCTGAGGATAACATCATGCAGATA
TGGCAAATGGCCGAAAATATTTACAATGACGAAGAGTCAGAAGTCACAACATCGGAACTGGAGGGACAAGGATCTTAA

Library Parental gene expression (RPM)
SRP017611_brain 41 .67 RPM
SRP017611_kidney 38 .52 RPM
SRP017611_liver 19 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002820 ortholog_one2one 1 retrogene
retro_btau_1579,
Mus musculus ENSMUSG00000031353 ortholog_one2one 1 retrogene
retro_mmus_3529,
Otolemur garnettii ENSOGAG00000014995 ortholog_one2one 1 retrogene
retro_ogar_2220,
Petromyzon marinus ENSPMAG00000007189 ortholog_one2many 1 retrogene
retro_pmar_26,
Pan troglodytes ENSPTRG00000021702 ortholog_one2one 5 retrogenes
retro_ptro_1802, retro_ptro_1909, retro_ptro_2226, retro_ptro_2987, retro_ptro_896,
Rattus norvegicus ENSRNOG00000005157 ortholog_one2one 1 retrogene
retro_rnor_1182,
Sorex araneus ENSSARG00000008079 ortholog_one2one 3 retrogenes
retro_sara_308, retro_sara_571, retro_sara_602,
Tupaia belangeri ENSTBEG00000010151 ortholog_one2one 2 retrogenes
retro_tbel_3031, retro_tbel_4341,
Tarsius syrichta ENSTSYG00000002385 ortholog_one2one 4 retrogenes
retro_tsyr_1608, retro_tsyr_1838, retro_tsyr_1957, retro_tsyr_427,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1939 92.51 78.12
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Download FASTA sequences of all ENSOCUG00000000683 retrocopies