>retro_tsyr_1740
CGGATGGAGGTCGAGACAGCTGGCCTGCGAGCTGCCATGGGAGTAGGAACCTCCTGCATGAACGACTTGACCATCATCCA
GACTACGCAGGGATTTTGCAGATACCTGGAAAAACAATTCAGTGACCCGAAGCAGAGAGGTGTCGTGATCAGCTTTGACG
CACGGGCCCATCCTCCCAGTGGCGGCAGCAGCCGCAGGTTTGCCCGACTTGCTGCGACCATGTTCATCAGTCAGGGGATT
CCTGTATACCTCTTTTCTGGCATAACCCCAACCCCTTTGTGCCCTACACAGTATCACATCTGAAACTCTGTGCGGGGATC
ATGGACACCGCTTCCCACAACCCGAAGCAAGATAATAGCTACAAGGTCTACTGGGATAAGGGAGCTCAGATCATCTCTCC
TCATGACAAAGGGATTTCTCAAGCTATTGAAGAAAATCTAAAGCCATGGCCTCATGCTTGGGACGACTCTTCAATTGATG
GCAGCCCACTGCTGCACGACCCAAATGCTTCCATCAATAACAACTACTTTGAAGACCTTAAAAAATACTGTTTTCACAGG
AGTGTGAACACAGAGACCAAGGTGAAGTTCATGCACCCTTCGTCCACGGGGTGGGGCATAACATCGTGCAGTCGGCTTTC
AAGGCTTTTGACCTTGTTCCTCCTGAGGCCGAGTCCAAGCAGAAAGATCCTGATCCTGAGTTCACGAGAGTGAAATACCC
AAATCCCGAAGAGGGTAAAGGTGTCTTGACTTTGTCTTTTGCTTTGGCTGACAAAACCAAAACTAAAATTGTGCTAGCAA
ATGACCCAGATGCGGATAGACTTGCTGTGGCAGAAAAACAAGTCAGTGGTGAATGGAGAGTGTTTTCAGGCAATGAGTTG
GGGGCGCTCCTGGGCTGGTGGATT
ORF - retro_tsyr_1740 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
57.57 % |
Parental protein coverage: |
51.62 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | RMTFGTAGLRSAMGAGFCYINDLTVIQSTQGMYKYLERCFSDFKQRGFVVGYDTRGQVTSSCSSQRLAKL |
| RM...TAGLR.AMG.G....NDLT.IQ.TQG...YLE..FSD.KQRG.V...D.R....S..SS.R.A.L |
Retrocopy | RMEVETAGLRAAMGVGTSCMNDLTIIQTTQGFCRYLEKQFSDPKQRGVVISFDARAHPPSGGSSRRFARL |
|
Parental | TAAVLLAKDVPVYLFSRYVPT-PFVPYAVQELKAVAGVMITASHNRKEDNGYKVYWETGAQITSPHDKEI |
| .A........PVYLFS...PT.PFVPY.V..LK..AG.M.TASHN.K.DN.YKVYW..GAQI.SPHDK.I |
Retrocopy | AATMFISQGIPVYLFSGITPT<PFVPYTVSHLKLCAGIMDTASHNPKQDNSYKVYWDKGAQIISPHDKGI |
|
Parental | LKCIEECVEPWNGSWNDNLVDTSPLKRDPLQDICRRYMEDLKKICFYRELNSKTTLKFVHTS-FHGVGHD |
| ...IEE...PW...W.D...D.SPL..DP...I...Y.EDLKK.CF.R..N..T..KF.H.S..HGVGH. |
Retrocopy | SQAIEENLKPWPHAWDDSSIDGSPLLHDPNASINNNYFEDLKKYCFHRSVNTETKVKFMHPS<VHGVGHN |
|
Parental | YVQLAFQVFGFRPPIPVPEQKDPDPEFSTVKCPNPEEGESVLELSLRLAEKENARIVLATDPDADRLAVA |
| .VQ.AF..F...PP.....QKDPDPEF..VK.PNPEEG..VL.LS..LA.K....IVLA.DPDADRLAVA |
Retrocopy | IVQSAFKAFDLVPPEAESKQKDPDPEFTRVKYPNPEEGKGVLTLSFALADKTKTKIVLANDPDADRLAVA |
|
Parental | ELQENGHWKVFTGNELAALFGWWM |
| E.Q..G.W.VF.GNEL.AL.GWW. |
Retrocopy | EKQVSGEWRVFSGNELGALLGWWI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1740 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
8 retrocopies.