>retro_tsyr_2119
CTTGCTGCGACCATGTTCATCAGTCAGGGGATTCCTGTATACCTCTTTTCTGGCATAACCCCAACCCCTTTGTGCCCTAC
ACAGTATCACATCTGAAACTCTGTGCGGGGATCATGGACACCGCTTCCCACAACCCGAAGCAAGATAATAGCTACAAGGT
CTACTGGGATAAGGGAGCTCAGATCATCTCTCCTCATGACAAAGGGATTTCTCAAGCTATTGAAGAAAATCTAGAGCCAT
GGCCTCAAGCTTGGGACGACTCTTCAATTGATGACAGCCCACTGCTGCACGACCCAAATGCTTCCATCAATAACGACTAC
TTTGAAGACCTTAAAAAATACTGTTTCCACAGGAGTGTGAACAGAGAGACCAAGGTGAAGTTCGTGCACACCTTCGTCCA
CGGGGTGGGGCATAACTTCGTGCAGTCGGCTTTCAAGGCTTTTGACCTTGTTCCTCCTGAGGCCGTGTCCAAGCAGAAAG
ATCCTGATCCTGAGTTCCCGAGAGTGAAATACCCAAATCCCGAAGAGGGTAAAGGTGTCTTGACTTCGTCTTTTGCTTTC
GCTGACAAAACCAAAACTAAAATTGTGCTAGCAAATGACCCAGATGCGGATAGACTTGCTGTGGCAGAAAAGCAAGACAG
TGGTGAATGGAGAGTGTTTTCAGGCAATGAGTTGGGGGCGCTCCTGGGCTGGTGGCTTTTTACTTCTTGGAAAGAAAAGA
ACAAGGACCGCAGTGCCCTCAAAGACACCTACATGTTGTCTAGCACCGTCTCCTCCAAAATCCTGCGTGCCATCGCCTTA
ACGGAGGGTTTCCATATCGAGGAAACATTAACTGGCTTTAAGTGGATGGGTATCAGAGCCAAGCAGCTGCTAGACCAGGG
AAAAACTGTCTTGTTTGCATTTGAGGAAGCTATGGGATATATGTGCTGCCCTTTTGTCCTGGACAAAGATGGAGTCAGTG
CCGCTGTCATAGGCGCAGAGCTGGCCAGTTTTCTAGCTACCAAGAATCTTTCTATGTCTCAGCAGCGTAAGGCCATCTAC
ATGGAGTATGGCTATCACCTTACCAAAGCTTTCTGTTTTATCTGATATGATCAAACCATTATTGAAACATTATTTGAAAA
CCTCCGAAACTACGATGGAAAAAATCACTATCCAAAAATGTGTGGCAGATTTGAAATATCTGCCATTAGGGACCTCACCA
CTGCCTATGATGACAGCCAACCTGATAAAAAGGCTGTTCTTCCCACGAGTAAAAGCAGCCAAATGATAACATTCACCTTT
GCCAATGGAGGAGTGGCCACCATGCGAACCAGTGGGACTGAGCCCAAAATCAAGTACTACACAGAACTGTGTGCCCCTCC
TGGAAACAGTGACCCTGAGCAGCTGAAGAAGGAACTGAATGAACTAGTCAGTGCGATTGAAGAACATTTTTTCCAGGCAC
AAAAGTACAATTTG
ORF - retro_tsyr_2119 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
58.93 % |
Parental protein coverage: |
82.91 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | LTAAVLLAKDVPVYLFSRYVPTP-FVPYAVQELKAVAGVMITASHNRKEDNGYKVYWETGAQITSPHDKE |
| L.A........PVYLFS...PTP.FVPY.V..LK..AG.M.TASHN.K.DN.YKVYW..GAQI.SPHDK. |
Retrocopy | LAATMFISQGIPVYLFSGITPTP<FVPYTVSHLKLCAGIMDTASHNPKQDNSYKVYWDKGAQIISPHDKG |
|
Parental | ILKCIEECVEPWNGSWNDNLVDTSPLKRDPLQDICRRYMEDLKKICFYRELNSKTTLKFVHTSFHGVGHD |
| I...IEE..EPW...W.D...D.SPL..DP...I...Y.EDLKK.CF.R..N..T..KFVHT..HGVGH. |
Retrocopy | ISQAIEENLEPWPQAWDDSSIDDSPLLHDPNASINNDYFEDLKKYCFHRSVNRETKVKFVHTFVHGVGHN |
|
Parental | YVQLAFQVFGFRPPIPVPEQKDPDPEFSTVKCPNPEEGESVLELSLRLAEKENARIVLATDPDADRLAVA |
| .VQ.AF..F...PP..V..QKDPDPEF..VK.PNPEEG..VL..S...A.K....IVLA.DPDADRLAVA |
Retrocopy | FVQSAFKAFDLVPPEAVSKQKDPDPEFPRVKYPNPEEGKGVLTSSFAFADKTKTKIVLANDPDADRLAVA |
|
Parental | ELQENGHWKVFTGNELAALFGWWMFDCWR-KNKPRNADVKNIYMLATTVSSKILKAIAFKEGFHFEETLP |
| E.Q..G.W.VF.GNEL.AL.GWW.F..W..KNK.R.A..K..YML..TVSSKIL.AIA..EGFH.EETL. |
Retrocopy | EKQDSGEWRVFSGNELGALLGWWLFTSWKEKNKDRSA-LKDTYMLSSTVSSKILRAIALTEGFHIEETLT |
|
Parental | GFKWIGSRIKDLLENGKEVLFAFEESIGFLCGTSVLDKDGVSAAVVVAEMASYLETMNVTLKQQLIKVYE |
| GFKW.G.R.K.LL..GK.VLFAFEE..G..C...VLDKDGVSAAV..AE.AS.L.T.N....QQ....Y. |
Retrocopy | GFKWMGIRAKQLLDQGKTVLFAFEEAMGYMCCPFVLDKDGVSAAVIGAELASFLATKNLSMSQQRKAIYM |
|
Parental | KYGYHISKTSYFLCYDPLTIKSIFERLRNFDSPKEYPKFCGTFAILHVRDITTGYDSSQPNKKSVLPVSK |
| .YGYH..K...F..YD...I...FE.LRN.D....YPK.CG.F.I...RD.TT.YD.SQP.KK.VLP.SK |
Retrocopy | EYGYHLTKAFCFI*YDQTIIETLFENLRNYDGKNHYPKMCGRFEISAIRDLTTAYDDSQPDKKAVLPTSK |
|
Parental | NSQMITFTFQNGCVATLRTSGTEPKIKYYAEMCASPDQSDTALLEEELKKLIEALIENFLQPSKNGL |
| .SQMITFTF.NG.VAT.RTSGTEPKIKYY.E.CA.P..SD...L..EL..L..A..E.F.Q..K..L |
Retrocopy | SSQMITFTFANGGVATMRTSGTEPKIKYYTELCAPPGNSDPEQLKKELNELVSAIEEHFFQAQKYNL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_2119 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
8 retrocopies.