>retro_tsyr_721
AATCCTTTAACGTTGGAGTCCGTGAAGCGACTGGTAGCAGAAGGCAATGAAGAAGAGCTGCACAGATGTTTTGGGGCCCG
GATGGAGGTCGAGACAGCTGGCCTGCGAGCTGCCATGGGAGTAGGAACCTCCTGCATGAACGACTTGACCATCATCCAGA
CTACGCAGGGATTTTGCAGATACCTGGAAAAACAATTCAGTGACCCGAAGCAGAGAGGTGTCGTGATCAGCTTTGACGCA
CGGGCCCATCCTCCCAGTGGCGGCAGCAGCCGCAGGTTTGCCCGACTTGCTGCGACCATGTTCATCAGTCAGGGGATTCC
TGTATACCTCTTTTCTGGCATAACCCCAACCCCTTTGTGCCCTACACAGTATCACATCTGAAACTCTGTGCGGGGATCAT
GGTCACCGCTTCCCACAACCCGAAGCAGGATAATAGCTACGAGGTCTACTGGGATAAGGAAGCTCAGATCATCTCTCCTC
ATGACAAAGGGATTTCTCAAGCTATTGAAGAAAATCTAGAGCCATGGCCTCAAGCTTGGGACGACTCTTCAATTGATGGC
AGCCCACTGCTGCACGACCCAAATGCTTCCATCAATAACGACTACTTTGAAGACCTTAAAAAATACTGTTTCCACAGGAA
TGTGAACAGAGAGACCAAGGTGAAGTTCGTGCACACCTTCGTCCACGGGGTGGGGCATAACTTCGTGCAGTCGGCTTTCA
AGGCTTTTGACCTTGTTCCTCCTGAGGCCGTGTCCAAGCAGAAAGATCCTGATCCTGAGTTCCCGAGAGTGAAATACCCA
AATCCCGAAGAGGGTAAAGGTGTCTTGACTTTGTCTTTTGCTTTGGCTGACAAAACCAAAACTAAAATTGTGCTAGCAAA
TGACCCAGATGCGGATAGACTTGCTGTGGCAGAAAAACAAGTCAGTGGTGAATGGAGAGTGTTTTCAGGCAATGAGTTGG
GGGCGCTCCTGGGCTGGTGGTTTTATACTTCTTGGAAAGAAAAGAACAAGGACCGCAGTGCCCTCAAAGACACCTACATG
TTGTCTAGCACCGTCTCCTCCAAAATCCTGCGTGCCATCGCCTTAAAGGAGGGTTTCCATATCGAGGAAAAGTTCACTGG
CTTTAAGTGGATGGGTAACAGAGCCAAGTAGCTGCTAGACCAGGTAAAAACTGTCTTGTTTGCATTTGAGGAAGCTATGG
GATATATGTGCTGCCCTTTTGTCCAGGACAAAGATGGAGTCAGTGCCGCTGTCATAGGCGCAGAGCTGGCCAGTTTTCTA
GCTACCAAGAATCTTTCTATGTCTCAGCAGCTGAAGGCCATCTACATGGAGTATGGCTATCACCTTACCAAAGCTTTCTG
TTTTATCTGACATGATCAAACCATCATTGAAACATTATTTGAAAACCTCCGAAACTACGATGGGAAAAACCACTATCCAA
AAATGTGTGGCAGATTTGAAATATCTGCCATTAGGGACCTCACCACTGGCTATGGCGACAGCCAACCTGATAAAAAGGCT
GTTCTTCCCACGAGTAAAAGCAGCCAAATGACAACATTCACCTTTGCCAGTGGAGGAATAGCCACCATGTGGACCAGTGG
GATGGAGCCCCAAATCAAGCTCTACACAGAACTGTGTGCCCCTCATGGAAACAGTGATCCTGAGTAGCTGAAGAAGGAAC
TGAGTGAACTAGTCAGTGCGATTGAAGAACATTTTTTCCAGCCAAAAAAGGACAATTTG
ORF - retro_tsyr_721 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
55.33 % |
Parental protein coverage: |
99.15 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | NPKTKEQIENLLRNGMNKELRDRLCCRMTFGTAGLRSAMGAGFCYINDLTVIQSTQGMYKYLERCFSDFK |
| NP.T.E....L...G...EL......RM...TAGLR.AMG.G....NDLT.IQ.TQG...YLE..FSD.K |
Retrocopy | NPLTLESVKRLVAEGNEEELHRCFGARMEVETAGLRAAMGVGTSCMNDLTIIQTTQGFCRYLEKQFSDPK |
|
Parental | QRGFVVGYDTRGQVTSSCSSQRLAKLTAAVLLAKDVPVYLFSRYVPTP-FVPYAVQELKAVAGVMITASH |
| QRG.V...D.R....S..SS.R.A.L.A........PVYLFS...PTP.FVPY.V..LK..AG.M.TASH |
Retrocopy | QRGVVISFDARAHPPSGGSSRRFARLAATMFISQGIPVYLFSGITPTP<FVPYTVSHLKLCAGIMVTASH |
|
Parental | NRKEDNGYKVYWETGAQITSPHDKEILKCIEECVEPWNGSWNDNLVDTSPLKRDPLQDICRRYMEDLKKI |
| N.K.DN.Y.VYW...AQI.SPHDK.I...IEE..EPW...W.D...D.SPL..DP...I...Y.EDLKK. |
Retrocopy | NPKQDNSYEVYWDKEAQIISPHDKGISQAIEENLEPWPQAWDDSSIDGSPLLHDPNASINNDYFEDLKKY |
|
Parental | CFYRELNSKTTLKFVHTSFHGVGHDYVQLAFQVFGFRPPIPVPEQKDPDPEFSTVKCPNPEEGESVLELS |
| CF.R..N..T..KFVHT..HGVGH..VQ.AF..F...PP..V..QKDPDPEF..VK.PNPEEG..VL.LS |
Retrocopy | CFHRNVNRETKVKFVHTFVHGVGHNFVQSAFKAFDLVPPEAVSKQKDPDPEFPRVKYPNPEEGKGVLTLS |
|
Parental | LRLAEKENARIVLATDPDADRLAVAELQENGHWKVFTGNELAALFGWWMFDCWR-KNKPRNADVKNIYML |
| ..LA.K....IVLA.DPDADRLAVAE.Q..G.W.VF.GNEL.AL.GWW....W..KNK.R.A..K..YML |
Retrocopy | FALADKTKTKIVLANDPDADRLAVAEKQVSGEWRVFSGNELGALLGWWFYTSWKEKNKDRSA-LKDTYML |
|
Parental | ATTVSSKILKAIAFKEGFHFEETLPGFKWIGSRIKDLLENGKEVLFAFEESIGFLCGTSVLDKDGVSAAV |
| ..TVSSKIL.AIA.KEGFH.EE...GFKW.G.R.K.LL...K.VLFAFEE..G..C...V.DKDGVSAAV |
Retrocopy | SSTVSSKILRAIALKEGFHIEEKFTGFKWMGNRAK*LLDQVKTVLFAFEEAMGYMCCPFVQDKDGVSAAV |
|
Parental | VVAEMASYLETMNVTLKQQLIKVYEKYGYHISKTSYFLCYDPLTIKSIFERLRNFDSPKEYPKFCGTFAI |
| ..AE.AS.L.T.N....QQL...Y..YGYH..K...F...D...I...FE.LRN.D....YPK.CG.F.I |
Retrocopy | IGAELASFLATKNLSMSQQLKAIYMEYGYHLTKAFCFI*HDQTIIETLFENLRNYDGKNHYPKMCGRFEI |
|
Parental | LHVRDITTGYDSSQPNKKSVLPVSKNSQMITFTFQNGCVATLRTSGTEPKIKYYAEMCASPDQSDTALLE |
| ...RD.TTGY..SQP.KK.VLP.SK.SQM.TFTF..G..AT..TSG.EP.IK.Y.E.CA....SD...L. |
Retrocopy | SAIRDLTTGYGDSQPDKKAVLPTSKSSQMTTFTFASGGIATMWTSGMEPQIKLYTELCAPHGNSDPE*LK |
|
Parental | EELKKLIEALIENFLQPSKNGL |
| .EL..L..A..E.F.QP.K..L |
Retrocopy | KELSELVSAIEEHFFQPKKDNL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_721 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
8 retrocopies.