>retro_tsyr_2095
AATCCTTTAACTTTGGAGTCCGTGAAGCGACTGATAGCAGAAGGCAATGAAGAAGAGCTGCACAGATGTTTTGGGGCCCG
GATGGAGGTCGAGACAGCTGGCCTGCGAGCTGCCATGGGAGTAGGAACCTCCTGCATGAACGACTTGACCATCATCCAGA
CTACGCAGGGATTTTGCAGATACCTGGAAAAACAATTCAGTGACCCGAAGCAGAGAGGTGTCGTGATCAGCTTTGACTCA
CGGGCCCATCCTCCCAGTGGCGGCAGCAGCCGCAGGTTTGCCCGACTTGCTGCGACCATGTTCATCAGTCAGGGGATTCC
TGTATACCTCTTTTCTGGCATAACCCCAACCCCTTTGTGCCCTACACAGTATCACATCTGAAACTCTGTGCGGGGATCAT
GGACACCGCTTCCCACAACCCGAAGCAAGATAATAGCTACAAGGTCTACTGGGATAAGGGAGCTCAGATCATCTCTCCTC
ATGACAAAGGGATTTCTCAAGCTATTGAAGAAAATCTAGAGCCATGGCTTCAAGCTTGGAACGACTCTTCAATTGATGAC
AGCCCACTGCTGCACGACCCAAATGCTTCCATCAATAACGACTACTTTGAAGACCTTAAAAAATACTGTTTCCACAGGAA
TGTGAACAGAGAGACCAAGGTGAAGTTCGTGCACACCTTCGTCCACGGGGTGGGGCATAACTTCGTGCAGTCGGCTTTCA
AGGCTTTTGACCTTGTTCCTCCTGAGGCCGTGTCCAAGCAGAAAGATCCTGATCCTGAGTTCCCGGGAGTGAAATACCCA
AATCCCGAAGAGGGTAAAGGTGTCTTGACTTCGTCTTTTGCTTTGGCTGACAAAACCAAAACTAAAATTGTGCTAGCAAA
TGACCCAGATGCGGATAGACTTGCTGTGGCAGAAAAGCAAGACAGTGGTGAATGGAGAGTGTTTTCAGGCAATGAGTTGG
GGGCGCTCCTGGGCTGGTGGCTTTTTACTTCTTGGAAAGAAAAGAACAAGGACCGCAGTGCCCTCAAAGACACCTACATG
TTGTCTAGCACCGTCTCCTCCAAAATCCTGCGTGCCATCGCCTTAACGGAGGGTTTCCATATCGAGGAAACATTAACTGG
CTTTAAGTGGATGGGTAACAGAGCCAAGCAGCTGCTAGACCAGGGAAAAACTGTCTTGTTTGCATTTGAGGAAGCTATGG
GATATATGTGCTGCCCTTTTGTCCAGGACAAAGATGGAGTCAGTGCCGCTGTCATAGGCGCAGAGCTGGCCAGTTTTCTA
GCTACCAAGAATCTTTCTATGTCTCAGCAGTGTAAGGCCATCTACATGGAGTATGGCTATCACCTTACCAAAGCTTTCTG
TTTTATCTGACATGATCAAACCATTATTGAAACATTATTTGAAAACCTCCGAAACTACGATGGAAAAAAATCACTATCCA
AAAATGTGTGGCAGATTTGAAATATCTGCCATTAGGGACCTCACCACTGCCTATGATGACAGCCAACCTGATAAAAAGGC
TGTTCTTCCCACGAGTAAAAGCAGCCAAATGATAACATTCACCTTTGCCAATGGAGGAGTGGCCACCATGCGAACCAGTG
GGACTGAGCCCAAAATCAAGTACTACACAGAACTGTGTGCCCCTCCTGGAAACAGTGACCCTGAGCAGCTGAAGAAGGAA
CTGAATGAACTAGTCAGTGCGATTGAAGAACATTTTTTCCAGGCACAAAAGTACAATTTG
ORF - retro_tsyr_2095 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
57.29 % |
Parental protein coverage: |
99.15 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | NPKTKEQIENLLRNGMNKELRDRLCCRMTFGTAGLRSAMGAGFCYINDLTVIQSTQGMYKYLERCFSDFK |
| NP.T.E....L...G...EL......RM...TAGLR.AMG.G....NDLT.IQ.TQG...YLE..FSD.K |
Retrocopy | NPLTLESVKRLIAEGNEEELHRCFGARMEVETAGLRAAMGVGTSCMNDLTIIQTTQGFCRYLEKQFSDPK |
|
Parental | QRGFVVGYDTRGQVTSSCSSQRLAKLTAAVLLAKDVPVYLFSRYVPTP-FVPYAVQELKAVAGVMITASH |
| QRG.V...D.R....S..SS.R.A.L.A........PVYLFS...PTP.FVPY.V..LK..AG.M.TASH |
Retrocopy | QRGVVISFDSRAHPPSGGSSRRFARLAATMFISQGIPVYLFSGITPTP<FVPYTVSHLKLCAGIMDTASH |
|
Parental | NRKEDNGYKVYWETGAQITSPHDKEILKCIEECVEPWNGSWNDNLVDTSPLKRDPLQDICRRYMEDLKKI |
| N.K.DN.YKVYW..GAQI.SPHDK.I...IEE..EPW...WND...D.SPL..DP...I...Y.EDLKK. |
Retrocopy | NPKQDNSYKVYWDKGAQIISPHDKGISQAIEENLEPWLQAWNDSSIDDSPLLHDPNASINNDYFEDLKKY |
|
Parental | CFYRELNSKTTLKFVHTSFHGVGHDYVQLAFQVFGFRPPIPVPEQKDPDPEFSTVKCPNPEEGESVLELS |
| CF.R..N..T..KFVHT..HGVGH..VQ.AF..F...PP..V..QKDPDPEF..VK.PNPEEG..VL..S |
Retrocopy | CFHRNVNRETKVKFVHTFVHGVGHNFVQSAFKAFDLVPPEAVSKQKDPDPEFPGVKYPNPEEGKGVLTSS |
|
Parental | LRLAEKENARIVLATDPDADRLAVAELQENGHWKVFTGNELAALFGWWMFDCWR-KNKPRNADVKNIYML |
| ..LA.K....IVLA.DPDADRLAVAE.Q..G.W.VF.GNEL.AL.GWW.F..W..KNK.R.A..K..YML |
Retrocopy | FALADKTKTKIVLANDPDADRLAVAEKQDSGEWRVFSGNELGALLGWWLFTSWKEKNKDRSA-LKDTYML |
|
Parental | ATTVSSKILKAIAFKEGFHFEETLPGFKWIGSRIKDLLENGKEVLFAFEESIGFLCGTSVLDKDGVSAAV |
| ..TVSSKIL.AIA..EGFH.EETL.GFKW.G.R.K.LL..GK.VLFAFEE..G..C...V.DKDGVSAAV |
Retrocopy | SSTVSSKILRAIALTEGFHIEETLTGFKWMGNRAKQLLDQGKTVLFAFEEAMGYMCCPFVQDKDGVSAAV |
|
Parental | VVAEMASYLETMNVTLKQQLIKVYEKYGYHISKTSYFLCYDPLTIKSIFERLRNFDSPK-EYPKFCGTFA |
| ..AE.AS.L.T.N....QQ....Y..YGYH..K...F...D...I...FE.LRN.D..K..YPK.CG.F. |
Retrocopy | IGAELASFLATKNLSMSQQCKAIYMEYGYHLTKAFCFI*HDQTIIETLFENLRNYDGKK>HYPKMCGRFE |
|
Parental | ILHVRDITTGYDSSQPNKKSVLPVSKNSQMITFTFQNGCVATLRTSGTEPKIKYYAEMCASPDQSDTALL |
| I...RD.TT.YD.SQP.KK.VLP.SK.SQMITFTF.NG.VAT.RTSGTEPKIKYY.E.CA.P..SD...L |
Retrocopy | ISAIRDLTTAYDDSQPDKKAVLPTSKSSQMITFTFANGGVATMRTSGTEPKIKYYTELCAPPGNSDPEQL |
|
Parental | EEELKKLIEALIENFLQPSKNGL |
| ..EL..L..A..E.F.Q..K..L |
Retrocopy | KKELNELVSAIEEHFFQAQKYNL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_2095 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
8 retrocopies.