RetrogeneDB ID: | retro_tsyr_2099 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_9051:34807..35400(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAR1A | ||
Ensembl ID: | ENSTSYG00000005955 | ||
Aliases: | None | ||
Description: | SAR1 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:10534] |
Percent Identity: | 91.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MSFIF-EWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAG-KTTLLHMLKDDRLGQHVPTLHPTSEELTIAG |
MSFI..EWI.NGF.SVLQFLGLY.KSGKLVFLGLDNAG.KTTLLHMLKDDRLGQHVPTLHPTSEELTIAG | |
Retrocopy | MSFIL<EWIHNGFNSVLQFLGLYRKSGKLVFLGLDNAG>KTTLLHMLKDDRLGQHVPTLHPTSEELTIAG |
Parental | MTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDR |
MT..TFDLGGHEQAR.VWK.YLPAINGIVFLVDCADHS.LMESKVELNALMT.ETISNVP.LILGNKIDR | |
Retrocopy | MTLITFDLGGHEQARWVWKYYLPAINGIVFLVDCADHSCLMESKVELNALMTEETISNVPVLILGNKIDR |
Parental | TDAISE-EKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID |
TDAIS..EKLREIFGLYG.TTGKGNVTLKELNA.PMEVFMCSVLKRQGYGEGFRWLSQYID | |
Retrocopy | TDAISK<EKLREIFGLYG*TTGKGNVTLKELNAHPMEVFMCSVLKRQGYGEGFRWLSQYID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016353 | 5 retrocopies | |
Homo sapiens | ENSG00000079332 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000024879 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000006626 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011243 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000005040 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000002374 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000002584 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000012780 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000008657 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000005955 | 2 retrocopies |
retro_tsyr_1204, retro_tsyr_2099 ,
|
Vicugna pacos | ENSVPAG00000002631 | 2 retrocopies |