RetrogeneDB ID: | retro_tsyr_89 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_2489:102696..103920(-) | ||
Located in intron of: | ENSTSYG00000005327 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM20B | ||
Ensembl ID: | ENSTSYG00000005482 | ||
Aliases: | None | ||
Description: | family with sequence similarity 20, member B [Source:HGNC Symbol;Acc:23017] |
Percent Identity: | 93.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MKLKQRVVLLAILLVIFIFTKVFLIDNLDTSAANREDQRAFHRMMTSLRVELVPRLDHTLQSPWEIAAQW |
MKLKQRVVLLAILLVIFIFTKVFLIDNLDTSAANREDQRAFHRMMTSLRVELVPRLDHTLQSPWEIAAQW | |
Retrocopy | MKLKQRVVLLAILLVIFIFTKVFLIDNLDTSAANREDQRAFHRMMTSLRVELVPRLDHTLQSPWEIAAQW |
Parental | VVPREVYPEETPELGAIMHAMATKKIIKADVGYKGTQLKALLILEGGQKVVFKPKRYSRDYVVEGEPYAG |
VVPREVYPEETPELGAIMHAMATKKIIKADVGYKGTQLKALLILEGGQKVVFKPKRYSRDYVVEGEPYAG | |
Retrocopy | VVPREVYPEETPELGAIMHAMATKKIIKADVGYKGTQLKALLILEGGQKVVFKPKRYSRDYVVEGEPYAG |
Parental | YDRHNAEVAAFHLDRILGFRRAPLVVGRFVNLRTEIKPVATEQLLSTFLTVGNNTCFYGKCYYCRETEPA |
YDRHNAEVAAFHLDRILGFR.A.LVVGRFVNL.TEI..VA.EQ.LSTFLTVGNNTCFYGKCYYCRETEPA | |
Retrocopy | YDRHNAEVAAFHLDRILGFRQASLVVGRFVNLQTEIISVAMEQMLSTFLTVGNNTCFYGKCYYCRETEPA |
Parental | CADGDTMEGSVTLWLPDVWPLQKHRHPWGRTYREGKLARWEYDESYCDAVKKTSP-YDSG-PRLLDIIDT |
CADGDT.EGSVTLWLPDVWPLQKH.HPWGRTYREGKL.RWEYDESYC.AV.KT.P.YDSG.PRLLD.IDT | |
Retrocopy | CADGDTIEGSVTLWLPDVWPLQKH*HPWGRTYREGKLTRWEYDESYCNAV-KTFP>YDSG<PRLLDVIDT |
Parental | AVFDYLIGNADRHHYESFQDDE-STTFILLDNAKSFGNPSLDERSILAPLYQCCIIRVSTWNRLNYLKNG |
AVFDYLIGNADRHHYESFQDDE.....ILLDNAKSFGNPSLDERSILAPLYQCCIIRVSTWNRLNY.KNG | |
Retrocopy | AVFDYLIGNADRHHYESFQDDEGASMLILLDNAKSFGNPSLDERSILAPLYQCCIIRVSTWNRLNYPKNG |
Parental | VLKSALKSAMAHDPISPVLSDPHLDTMDQRLLSILATVKQCTDQFGMDTVLVEDRMPLSHL |
VLKSALKSAMAHDP.SPVLSDP.LDTMDQRLLS.LAT.KQC.DQFGMDTVLVEDRMPLS.L | |
Retrocopy | VLKSALKSAMAHDPVSPVLSDPYLDTMDQRLLSVLATMKQCPDQFGMDTVLVEDRMPLSRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005236 | 6 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000006175 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000005651 | 1 retrocopy | |
Homo sapiens | ENSG00000116199 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002484 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006654 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006260 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015580 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012751 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000466 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000001725 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000005086 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000005482 | 3 retrocopies |
retro_tsyr_2065, retro_tsyr_2124, retro_tsyr_89 ,
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