RetrogeneDB ID:

retro_ttru_254

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1700:172295..172531(+)
Located in intron of:ENSTTRG00000006578
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:BOLA3
Ensembl ID:ENSTTRG00000006698
Aliases:None
Description:bolA homolog 3 (E. coli) [Source:HGNC Symbol;Acc:24415]


Retrocopy-Parental alignment summary:






>retro_ttru_254
CTTCTCTTCTGTGCTCAGCGCATGTTTGCCTCGCAGACTGAGGGGGAGCTCAAAGTGACCCAAATTCCTCAAGAAAAGTT
TCCTCAGCTACAGCTATCAAATTCCCTGACATTTCAGGAGGTTGTGGGGCAATGTATGAAATTCAAATTGAATTGGAAGA
ACTTAAGGAGAAGAGAACGGTCCAACAGCATCAGATGGTAAATCAGGCATTAAAAGAAGAAATCAAAGGTATGCAC

ORF - retro_ttru_254 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.25 %
Parental protein coverage: 71.56 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalLLHCAQRMFASQTEGELKVTQILKEK-PQ-ATAIKVTDIXXGCGAMYEIQIESEEFKEKRTVQQHQMVNQ
LL.CAQRMFASQTEGELKVTQI..EK.PQ.ATAIK..DI..GCGAMYEIQIE.EE.KEKRTVQQHQMVNQ
RetrocopyLLFCAQRMFASQTEGELKVTQIPQEKFPQ<ATAIKFPDISGGCGAMYEIQIELEELKEKRTVQQHQMVNQ
ParentalALKEEIKGMH
ALKEEIKGMH
RetrocopyALKEEIKGMH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_254 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_254 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 14 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000087391 retrocopy
Callithrix jacchus ENSCJAG000000178441 retrocopy
Dasypus novemcinctus ENSDNOG000000083092 retrocopies
Myotis lucifugus ENSMLUG000000163641 retrocopy
Mustela putorius furoENSMPUG000000078131 retrocopy
Mus musculus ENSMUSG000000451601 retrocopy
Oryctolagus cuniculus ENSOCUG000000166581 retrocopy
Otolemur garnettii ENSOGAG000000035021 retrocopy
Sorex araneus ENSSARG000000017541 retrocopy
Sus scrofa ENSSSCG000000082911 retrocopy
Tursiops truncatus ENSTTRG00000006698 3 retrocopies
retro_ttru_1149, retro_ttru_1493, retro_ttru_254 ,



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