RetrogeneDB ID:

retro_ttru_472

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_2399:277814..278487(-)
Located in intron of:ENSTTRG00000008250
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MORF4L1
Ensembl ID:ENSTTRG00000016606
Aliases:None
Description:mortality factor 4 like 1 [Source:HGNC Symbol;Acc:16989]


Retrocopy-Parental alignment summary:






>retro_ttru_472
AAAGCCAATCAGAAGCAGTACGCAGAGGGCAAGATGAGAGGGGCTGCCCCGGAAGGAAGACTTCTGGTTTGCAACAGAAA
AATGTTGGCGTGAAAACAAAAAAGAACAAACAGAAAACACCTGGAAATGGAGACGGTGGTAGTACGAGTGAGACACCTCA
GTCTCCTCGCGAGGAAAGGGCCCGAGTAGCTTCTACTGTTGAAAATGAGGAAACATTCATGAACAGAGTTGAAGTTAAAG
TAAAGATTCCTGAAGAACTAAAACCATGGCTTGTTGAAGACCGGGACTTAATTACCTGGCAAAAAGAGCTCTTTTATCTT
CCTGACAAGAAGAATGTGGATTCCATTCTAGAGGATTCTGCAAACTACAAGACATCTTGAAGAAACACAGAAAATAAGGA
GTATGCTGTTAATGAAGTTGTGGCAGGGATCAAGGAATACTTCAGTGTAATGCTGGGCACTCAGCTGCTCTGCAAACATG
AGAGACCGCAGTATGCTGAAATCCTTGCAGATCACCCTGATGCGCCATGTCCAAGGTGCATGCAGTGCCACATCTACTGA
GATTATTTGTACGTGTTGGAGCAATGCTGGCCTACACACCTCTGGATGAGAAGAGCCTTGCTTTATTACTGAATTATCTT
CATGATTTCCTAGAACACCTGGCAAAGAACTCT

ORF - retro_ttru_472 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.78 %
Parental protein coverage: 62.15 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalKANQEQYAEGKMRGAAP-GKKTSGLQQKNVEVKTKKNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVEN
KANQ.QYAEGKMRGAAP.G.KTSGLQQKNV.VKTKKNKQKTPGNGDGGSTSETPQ.PR..RARV..TVEN
RetrocopyKANQKQYAEGKMRGAAP<GRKTSGLQQKNVGVKTKKNKQKTPGNGDGGSTSETPQSPREERARVASTVEN
ParentalEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNE
EETFMNRVEVKVKIPEELKPWLV.D.DLIT.QK.LFYLP.KKNVDSILED.ANYK.S..NT.NKEYAVNE
RetrocopyEETFMNRVEVKVKIPEELKPWLVEDRDLITWQKELFYLPDKKNVDSILEDSANYKTS*RNTENKEYAVNE
ParentalVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAP-MSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLA
VVAGIKEYF.VMLGTQLL.K.ERPQYAEILADHPDAP.MS.V...PHLLRLFVR.GAMLAYTPLDEKSLA
RetrocopyVVAGIKEYFSVMLGTQLLCKHERPQYAEILADHPDAP<MSKVHAVPHLLRLFVRVGAMLAYTPLDEKSLA
ParentalLLLNYLHDFLKYLAKNS
LLLNYLHDFL..LAKNS
RetrocopyLLLNYLHDFLEHLAKNS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_472 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_472 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 31 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000109881 retrocopy
Canis familiaris ENSCAFG000000141131 retrocopy
Callithrix jacchus ENSCJAG000000022145 retrocopies
Felis catus ENSFCAG000000121971 retrocopy
Loxodonta africana ENSLAFG000000098511 retrocopy
Monodelphis domestica ENSMODG000000115172 retrocopies
Oryctolagus cuniculus ENSOCUG000000151172 retrocopies
Otolemur garnettii ENSOGAG000000060474 retrocopies
Sarcophilus harrisii ENSSHAG000000184021 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000132943 retrocopies
Tupaia belangeri ENSTBEG000000018978 retrocopies
Tursiops truncatus ENSTTRG00000016606 1 retrocopy
retro_ttru_472 ,
Vicugna pacos ENSVPAG000000088471 retrocopy



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