RetrogeneDB ID:

retro_ttru_853

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_37:103448..104039(-)
Located in intron of:ENSTTRG00000004984
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ARPC1A
Ensembl ID:ENSTTRG00000003002
Aliases:None
Description:actin related protein 2/3 complex, subunit 1A, 41kDa [Source:HGNC Symbol;Acc:703]


Retrocopy-Parental alignment summary:






>retro_ttru_853
AAACCCATTCGCTCCACGGTCGCCAGTACACCCTGGGGCAGCAAGATGCCTTTTGGTCAGCTGATGTCAGAGTTTGGTGG
CAGTGGCACTGGCGGCTGGGTGAATGGGGTCAGCTTCTTTGCCAGCGGGAGCCGCCTGGCCTGGGTCAGCCACGACGGCA
CCGTGTCTGTTGTTGATGCCTCAAAAAGCGTGCAGGTCTCAACTCTGAAGACAGAGTTCCTGCCCCTCCTGAGTGTGTCG
TTCGGCTCAGAGAACAGCGTTGTGGCTGCTGGCCATGACTGCTGCCCCATGCTCTTTAACTACGACGACCGTGGCTGCTT
GACCTTCGTCTCCAAGCTAGACCTCCCGAAAGAGAGCATCCAGCGCAACATGTCGGCCATGGAGCACTTCCACAACACGG
ACAAGTGGGCCATGACCAAGGACCGAAACACAGCCCTGGAGACGCTGCACCAGAACAGCATCACTCAAGTGTCTATTTAT
GAGGTGGACAATCAAGATTGTCGCAAATTTTGCACTACTGGCATTGACGGAGCCATGACCATTTGGGATTTCAAGACCTT
AGAGTCTTCTATCCAGGGCCTTTGGATAATG

ORF - retro_ttru_853 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.82 %
Parental protein coverage: 56.61 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQVSTLK
K......ASTPWGSKMPFGQLMSEFGGSGTGGWV.GVSF.ASGSRLAWVSHD.TVSV.DASKSVQVSTLK
RetrocopyKPIRSTVASTPWGSKMPFGQLMSEFGGSGTGGWVNGVSFFASGSRLAWVSHDGTVSVVDASKSVQVSTLK
ParentalTEFLPLLSVRFVSENSVVAAGHDCCPMLFSCDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTE
TEFLPLLSV.F.SENSVVAAGHDCCPMLF..DDRGCLTFVSKLD.PK.SIQRNMSAME.F.N.DK.A.T.
RetrocopyTEFLPLLSVSFGSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDLPKESIQRNMSAMEHFHNTDKWAMTK
ParentalDRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRIM
DRNTALETLHQNSITQVSIYEVD.QDCRKFCTTGIDGAMTIWDFKTLESSIQGL.IM
RetrocopyDRNTALETLHQNSITQVSIYEVDNQDCRKFCTTGIDGAMTIWDFKTLESSIQGLWIM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_853 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_853 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 30 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG000000059845 retrocopies
Macropus eugenii ENSMEUG000000056098 retrocopies
Monodelphis domestica ENSMODG000000013039 retrocopies
Oryctolagus cuniculus ENSOCUG000000039441 retrocopy
Sarcophilus harrisii ENSSHAG000000106732 retrocopies
Sus scrofa ENSSSCG000000076091 retrocopy
Tursiops truncatus ENSTTRG00000003002 4 retrocopies



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