RetrogeneDB ID:

retro_ttru_1621

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_73330:0..670(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ARPC1A
Ensembl ID:ENSTTRG00000003002
Aliases:None
Description:actin related protein 2/3 complex, subunit 1A, 41kDa [Source:HGNC Symbol;Acc:703]


Retrocopy-Parental alignment summary:






>retro_ttru_1621
ACGGTCCTTCAGCTTGGATTGGATCCCAACAACGTCTTGCTGGCAGCAGGATCCTGTGATTTCAAATGCAGAGTGTTTTC
TGCCTACATTCAAGAAGTGGATGAGAAGCCAGCCAGTACGCCCATGGGGCAGCAAGATGCCTTTTGGTCATCTGATGTCA
GAGTTTGGTGGCAGTGGCCCTGGCGGCTGGGTGCGCAAGGTCAGCTTCTCCGCCAGCGGGAGCCGCCTGGCCTGGGTCAG
CCACGACGGCCCCGTGTCCGTTGCCGATGCCTCAAAAAGCATGCAGATCTCAACTCTGAAGACAGAGTTCCTGCCCCTCC
TGAGTGTGTCCTTCATCTCGGAGGACAGCGTCCTGGCTGCTGGCCATGACTGCTGCCCCATGCTCTTTAGCTGCGCCGAC
CGCGGCTGCTTGACCTTTGTCTCCAAGCTAGACATCCCGAAACAGAGCATCCAGCGCAACGTGTCAGCCACGGAGCGCTT
CTGCAACATGGACAAGCGGGCCACGACCGAGGACCGCAACCCGGCCCTGGAGATGCTGCGCCAGGACAGTATCACTCAAA
TGTCTATTTATGAGGCAGACAGGCAAGATTGTTGCAAATTTTGCACTACTGGCATCGATGGAGCCATGACCTTTTGGGAT
TTCAAGACCTTAGAGTCTTCTATCCAGGGC

ORF - retro_ttru_1621 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.16 %
Parental protein coverage: 64.08 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTP-WGSKMPFGQLMSEFGGSGTGGWVHGVSF
TVL.L...PNNVLLAAGSCDFKCRVFSAYI.EVDEKPASTP.WGSKMPFG.LMSEFGGSG.GGWV..VSF
RetrocopyTVLQLGLDPNNVLLAAGSCDFKCRVFSAYIQEVDEKPASTP>WGSKMPFGHLMSEFGGSGPGGWVRKVSF
ParentalSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVRFVSENSVVAAGHDCCPMLFSCDDRGCLTF
SASGSRLAWVSHD..VSVADASKS.Q.STLKTEFLPLLSV.F.SE.SV.AAGHDCCPMLFSC.DRGCLTF
RetrocopySASGSRLAWVSHDGPVSVADASKSMQISTLKTEFLPLLSVSFISEDSVLAAGHDCCPMLFSCADRGCLTF
ParentalVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAM
VSKLDIPKQSIQRN.SA.ERF.NMDKRATTEDRN.ALE.L.Q.SITQ.SIYE.D.QDC.KFCTTGIDGAM
RetrocopyVSKLDIPKQSIQRNVSATERFCNMDKRATTEDRNPALEMLRQDSITQMSIYEADRQDCCKFCTTGIDGAM
ParentalTIWDFKTLESSIQG
T.WDFKTLESSIQG
RetrocopyTFWDFKTLESSIQG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1621 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1621 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 30 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG000000059845 retrocopies
Macropus eugenii ENSMEUG000000056098 retrocopies
Monodelphis domestica ENSMODG000000013039 retrocopies
Oryctolagus cuniculus ENSOCUG000000039441 retrocopy
Sarcophilus harrisii ENSSHAG000000106732 retrocopies
Sus scrofa ENSSSCG000000076091 retrocopy
Tursiops truncatus ENSTTRG00000003002 4 retrocopies



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