RetrogeneDB ID: | retro_meug_1081 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold280953:862..1395(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC1A | ||
Ensembl ID: | ENSMEUG00000005609 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 1A, 41kDa [Source:HGNC Symbol;Acc:703] |
Percent Identity: | 58.24 % |
Parental protein coverage: | 51.44 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | KFAVGSGARLISVCYFESENDWWVSKHI-KKPIRSTVLSLDWHPNNV-LLAAGSCDFKCRVFSAYIKEVD |
KF..G...RLI....F.SEN...VSKH...K.I.STVL..DWHPNNV.LLAAGSCDFKCRVFSAYIKE.. | |
Retrocopy | KFTIGNVVRLIFIHSFQSENEG*VSKHL<VKGICSTVLIFDWHPNNV<LLAAGSCDFKCRVFSAYIKESE |
Parental | EKPASTPWGTKMPFGQLMSEFGGTGSGGWVHGVSFSASGNRLAWVSHDSTVSVADASKNMXXXXXXXXXX |
EKP..TPWGT...F.QLMS.F..T....WVHG.SFS.SGN.L..VS.DSTVSVAD..K.M.......... | |
Retrocopy | EKPDGTPWGTRILFCQLMSQFVSTRRDVWVHGFSFSVSGNYLT*VSNDSTVSVADTPKTMIVSQLKTEFL |
Parental | XXXXVSFVSE-NSVVAAGHDCCPMLFNYDDRGSLTFVSKLDI |
....V.FV.E...V......C.P.LFNYDD.GSLTF..K.DI | |
Retrocopy | SLLSVLFV*E>SIVATGHDSC-PILFNYDDHGSLTFFYKPDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |