RetrogeneDB ID: | retro_vpac_272 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_3541:258860..259210(+) | ||
Located in intron of: | ENSVPAG00000003857 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL27A | ||
Ensembl ID: | ENSVPAG00000011227 | ||
Aliases: | None | ||
Description: | ribosomal protein L27a [Source:HGNC Symbol;Acc:10329] |
Percent Identity: | 62.3 % |
Parental protein coverage: | 80.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | HRKH-PGGRGNAGGMHHHRI-NFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAK |
H..H.P...G......HH........H.G.FG...M.H..LK..QSFCPTVNLDKLWTLV.EQTRV.AAK | |
Retrocopy | HHEH<PEAPGRCASGLHHHS<HKHQHHLGHFGEISMKHQPLKK-QSFCPTVNLDKLWTLVREQTRVTAAK |
Parental | NKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIV-KAKFFSRRAEEKIKGVGGA |
N.TGAAPI.DVVRS..YKVLGK.K.P.QP.I..KA.FFSRRA.E.IKGVG.A | |
Retrocopy | NQTGAAPIFDVVRSTSYKVLGKVKRPGQPIIM>KARFFSRRA-EPIKGVGEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004205 | 15 retrocopies | |
Bos taurus | ENSBTAG00000005349 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000006936 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011775 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016616 | 7 retrocopies | |
Mus musculus | ENSMUSG00000046364 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005442 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004717 | 11 retrocopies | |
Rattus norvegicus | ENSRNOG00000014214 | 10 retrocopies | |
Vicugna pacos | ENSVPAG00000011227 | 7 retrocopies |
retro_vpac_200, retro_vpac_272 , retro_vpac_286, retro_vpac_426, retro_vpac_508, retro_vpac_581, retro_vpac_99,
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