RetrogeneDB ID: | retro_btau_45 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 3:14353680..14354127(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000021649 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.23343 | ||
Ensembl ID: | ENSBTAG00000005349 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L27a [Source:UniProtKB/Swiss-Prot;Acc:Q56K03] |
Percent Identity: | 98.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFC |
MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFC | |
Retrocopy | MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFC |
Parental | PTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGV |
PTVNLDKLWTLVSEQT.VNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEK.KGV | |
Retrocopy | PTVNLDKLWTLVSEQTQVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKTKGV |
Parental | GGACVLVA |
GGACVLVA | |
Retrocopy | GGACVLVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 1 .51 RPM | 93 .87 RPM |
ERP005899_muscle | 0 .63 RPM | 1323 .48 RPM |
SRP017611_brain | 0 .05 RPM | 63 .31 RPM |
SRP017611_kidney | 0 .18 RPM | 159 .68 RPM |
SRP017611_liver | 0 .08 RPM | 119 .68 RPM |
SRP030211_testis | 0 .29 RPM | 62 .63 RPM |