RetrogeneDB ID: | retro_rnor_606 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:141849297..141849594(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl27a | ||
Ensembl ID: | ENSRNOG00000014214 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L27a [Source:UniProtKB/Swiss-Prot;Acc:P18445] |
Percent Identity: | 77.45 % |
Parental protein coverage: | 68.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFC |
.PSRLRK..KLRGHVS.GH....KH...P.GRGNAGG.HHHRINFDKY.PGYF..VGM.HYHLKRNQSFC | |
Retrocopy | VPSRLRKAEKLRGHVSLGHSYTTKH---PEGRGNAGGVHHHRINFDKYDPGYFREVGMKHYHLKRNQSFC |
Parental | PTVNLDKLWTLVSEQTRVNAAKNKNGVAPIID |
PTVNLDKLW.LV.EQTRVNAAKNK.G.AP..D | |
Retrocopy | PTVNLDKLWMLVCEQTRVNAAKNKTGAAPLCD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 68 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 93 .23 RPM |
SRP017611_liver | 0 .00 RPM | 54 .26 RPM |