Detailed information on CNT0000041 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005926, E-value = 8e-19 (V. vinifera)
CNT0042553, E-value = 2e-19 (A. thaliana)
CNT0035158, E-value = 2e-10 (P. patens)
CNT0021574, E-value = 8e-22 (Z. mays)
CNT0022384, E-value = 5e-17 (A. trichopoda)
CNT0027330, E-value = 9e-28 (O. sativa)
CNT0008938, E-value = 2e-10 (S. tuberosum)

Expression of CNT0000041

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MTNERMNLHYSDIDAYISLIAGPKCNSAAYTIVHEKISNCSFYYIKKYTREDANLLEDKDNKDVNCRLVLIYIYIYIYIYIYIYIYIYIYIKHEN*

>peptide 2 (36 aa)
MNQTPPESNMPILFAVNKRKGPNWFHQHNTKNHGIT*

>peptide 3 (30 aa)
MRRYPTAAFIILKNILEKMPIYLKTRITKM*

>peptide 4 (37 aa)
MIKFSSLHLLLDFNYPSMQHAEVSMYDLVIVVFVIVS*

>peptide 5 (54 aa)
MGHPPCIQAPSPKVLGMRGCLGKNPNSILARDKVNIEHISGGQPSPFELAFGLS*

>peptide 6 (40 aa)
MVSESILDPLNGSPTMHPSTKPKSVGHEGVSWKKSKFYIG*

>peptide 7 (30 aa)
MRMLSRVFNKKCVWLTIKLVGNIFYIPRNN*

>peptide 8 (54 aa)
MIINGISLKPNPTHNKEVNTNSISSNIWLWYILAATASMTILYAAKNKMNENWL*

>peptide 9 (55 aa)
MKQLNSIKDDILLNKTTKHFSPLITLNCKARADNKGNEIHQTEPLQKEAKHKATL*

>peptide 10 (29 aa)
MALHDNTFSVLHSVTGVYDNNKQQMSIQP*

>peptide 11 (79 aa)
MCFRCFFNLLVLLKTCTSATRNSINTLATTTHVFFAAQIVAFNVIVFLDLASLLPISNFLVICFLAICNRWPHLAPVTF*

Sequence

>CNT0000041
CATAATTCTGTGAGCTTCAAAAAAGATGATAAAGTTTTCATCACTACATCTGTTGCTAGACTTTAACTATCCTTCCATGCAACATGCGGAAGTGTCTATG
TATGACTTGGTAATAGTAGTTTTCGTGATTGTTTCTTAAATTTATTGAACCTCGACAAAAAAAAATATTGGGTAATAAACTTCCAAGCAACCTAAAAAAC
ATGGTTTAGAGAGTAACCTACGCTGCCCTTCTGTACAGTTTGTAAGCCACAACAACAACTGCTACAGCTCCAAGCACACCAACAGCTGTGCGAATATCAC
GCTGCTGCAGTTGAGGCCAATTCGAACAGATTTTGCTCCCCTTCTTATGTGTTTCAGGTGTTTCTTCAATCTCCTTGTTTTGCTCAAGACTTGCACTTCT
GCAACAAGAAACTCCATTAACACCCTGGCAACAACCACCCACGTTTTCTTTGCTGCTCAGATTGTCGCTTTCAACGTGATTGTTTTTCTTGACCTTGCCA
GTCTCCTCCCCATTAGCAACTTTCTGGTCATCTGCTTCCTTGCCATCTGCAACAGATGGCCCCATTTGGCCCCTGTAACATTTTGATTAAGTTTACCTAA
TAACCCTCCATTATAAGGGAAGAAAATGTTAATCGTTAATACAGAATTTCCAGAGTTGATGTTGATCTTGGAGGATTGTCAATCCTAACACAAACTGGCC
CGTGTTTTAGCTTACTGGTATGTTGTGATTTTTGGATGTACCTCGTGAGATTTATATAGCATCAATTTATCATTGAATGTTTATTGACATGTCCTACTTT
AAGAAAAAAAATTACAAGCAATGATCACATGAAGCAACTGAACAGTATCAAAGATGATATATTGCTTAATAAAACAACCAAACATTTTTCTCCTTTGATT
ACTTTGAATTGTAAAGCAAGGGCAGATAACAAAGGGAACGAAATCCATCAGACAGAACCATTACAAAAGGAAGCGAAACATAAGGCAACATTATGATAGA
TGGACGAGAATGAAGGCACATGACAAATGAAAGAATGAACCTGCATTATTCTGATATAGACGCCTATATAAGCTTAATAGCAGGGCCGAAATGTAACTCA
GCAGCATATACTATAGTTCATGAGAAGATATCCAACTGCAGCTTTTATTATATTAAAAAATATACTCGAGAAGATGCCAATTTACTTGAAGACAAGGATA
ACAAAGATGTGAATTGTAGGCTTGTATTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCAAGCATGA
GAACTAATAATGCATAATTCTTGAACCTTTATCAAATGTTGGCCATAACTTTTTCTTAGGGGACATTTGTTTCCCGGATAACTTTTTTAGTCCTAGAAAT
ATTATTCCTTGGAATAAAATATGAGAATGTTATCCCGGGTATTTAATAAAAAATGTGTTTGGTTAACTATAAAATTAGTTGGGAATATTTTTTATATTCC
CAGGAATAATTAAGACATGTTTGGTTAATTATTTTTTCCTAGGAATATATATTATAATTACTAAAATATTCTTATTACAATAATGCTATTTTTTTTCATA
AAACAAACAACTTTATTATAAGACCAACAAATGGCAAGCAAATTGTTCTCAAAATGTTGTATATCCGACGTTCTTATGACAAAACCCCTCTCATTACTCC
TTTAACAATTCATTAGAGTATGACCCAAATATAAATATACCTATCCGCACCACATTAGGCATGCAAAGAACAATTGATCATGATCTCATCACATAGTTAG
TGATACAGCCAAAACCAACGAAGTGTTGTTACCCAGCCAAGACGTCCACCACCACAACACGTCAATATGATAATTAATGGAATTTCACTCAAACCCAACC
CAACACATAACAAAGAAGTAAACACTAACTCAATAAGTAGCAATATATGGTTATGGTATATCTTAGCTGCAACTGCAAGCATGACCATTTTATACGCTGC
CAAAAATAAAATGAACGAAAATTGGCTGTAAATAAAAATTGGCACATGACAAAAAATTTGAGAATGACAAAAATTAGATAAAGTAAATAAAGGGATCATT
AAGAGGGGAGCACGATAATGACTAGGAAGAGGGTACATGTGTATTTTTAGTCACAATGGGGATTTTTGTCCCATGGGAATAAATATTTTCTACCTCCTCC
ATTGGGATTAAATATTGGCTGAAGGCGAGATTATTGTTTACCAAGGTAAAAAATATACCCACGATTATTTTATTACTTCACAACAAACGCGGGATTATTT
TTTCACCCTCCTGTATTCCCAAGACAAAAAATATTCTACCCATGAATCAAACGCCCCCTGAGAGTAACATGCCAATATTATTCGCAGTAAACAAGAGGAA
AGGTCCCAATTGGTTCCATCAGCACAACACCAAAAACCATGGCATTACATGATAACACCTTCTCTGTACTCCATTCAGTAACAGGTGTGTATGACAACAA
TAAACAGCAGATGTCAATACAACCATAAGAATGAATAGATGGACATGATATCCATAACATGCAGGGGCATATGATTGCTGTATTTCATCTTACGAAAAAG
AAAATCCATGAAGCAATAATTTCACATTAAAAAATGGTCACAATCAAACTAGAGATGCATGAGCTCAAGTATTTCAGCAATAGAACTTGTTTATACCAGG
ATAATGGATAGATGAGAAGAGAAACAAATATGTACACCTAGTCAAAATTTGATAATCATCCAAAGGCAACAGCAAAAATTGGTGATAAGTGTGAGGCAGT
CTGACAGGATCCGGCAATCAACAATAGGTAGGCCTTTCCAATTTTATACCCGGAGACCCAAAACTTTTAAGCCCAACATGCCTGTTGGCAGAAATTAGAA
GTTAAGGGGAAGATGGTTATAAAAAGAGAAAGTAGTTACAGAGAGAGAAAGGGGAATCTGCTAAATAGAAGAGAATGAGAATAATGTACGTGTGGAATAT
TTGATTTAGAGTGGGAGTTGAGATAGAGGGCTCTCAGAGTTGGGGCTTAGGCCATACTTGTATTCCTTTCATTCACGTTATTAATATCTATTGGAAAAAA
ATCCAAGTCCCATATTAGATAGAGATAAGGCCAATATAGAATATATAAGTGGGGGACAACTCTCACTCTTTGAGCTAGCTTTTGGAGTTGAATTAGGTCC
AAACCCACATTCTAAGATGGTATCAGAGTCTATCCTAGATCCATTAAATGGGTCACCCACCATGCATCCAAGCACCAAGCCCAAAAGTGTTGGGCATGAG
GGGGTGTCTTGGAAAAAATCCAAATTCTATATTGGCTAGAGATAAGGTCAATATAGAGCATATAAGTGGGGGGCAACCCTCACCCTTTGAGCTAGCTTTT
GGATTGAGTTAGGCCCAAACTCACATTCTCAAAATATCAATAGCAAAATCCCATCACAGTCTCTAACTAACTACCTGGACACTCCTCAAATCAATTGTTC
ATGCATGAACACGTGTGTGTAACGAAACAGTGATTCTTTTGATCGATCTACAACATAGTTCAGCAGCTAACAGTAGAATACTTCAAAAATTTTAAGAAAC
GCATTATAAATGTTTATTGTTGTCATAAGAAACAATATATCCTTCAAATTAACATTTGATTAAAAGACACAAAATTCATAACCACAAAAATACCAACCTC
AAAAGTCGTTGGATGACCTCTCCCTTTGCAATATG

lncRNA-RNA interactions

Number of interactions: 15

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G07400.2 Uncharacterized protein protein coding CNT0000041 157 110 CDS Trans
GLYMA03G07400.2 Uncharacterized protein protein coding CNT0000041 141 118 CDS Trans
GLYMA06G42485.1 Uncharacterized protein protein coding CNT0000041 166 110 CDS Trans
GLYMA06G42485.1 Uncharacterized protein protein coding CNT0000041 160 114 CDS Trans
GLYMA09G30450.1 Uncharacterized protein protein coding CNT0000041 179 126 CDS Trans
GLYMA15G14790.2 Uncharacterized protein protein coding CNT0000041 121 95 CDS_UTR Trans
GLYMA16G07595.1 Uncharacterized protein protein coding CNT0000041 768 288 CDS Cis
GLYMA16G07595.1 Uncharacterized protein protein coding CNT0000041 2282 822 CDS_UTR Cis
GLYMA16G24486.1 Uncharacterized protein protein coding CNT0000041 238 165 CDS Trans
GLYMA16G24751.1 Uncharacterized protein protein coding CNT0000041 161 109 CDS Trans
GLYMA16G24751.1 Uncharacterized protein protein coding CNT0000041 189 135 CDS Trans
GLYMA16G24751.1 Uncharacterized protein protein coding CNT0000041 150 102 CDS Trans
GLYMA16G24751.1 Uncharacterized protein protein coding CNT0000041 202 134 CDS Trans
GLYMA19G10120.1 Uncharacterized protein protein coding CNT0000041 524 279 CDS Trans
GLYMA19G10120.1 Uncharacterized protein protein coding CNT0000041 1344 693 CDS_UTR Trans