Detailed information on CNT0000474 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 2e-13

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007004, E-value = 1e-20 (V. vinifera)
CNT0033674, E-value = 2e-12 (P. patens)
CNT0019050, E-value = 4e-23 (Z. mays)
CNT0028514, E-value = 1e-32 (O. sativa)
CNT0009490, E-value = 7e-22 (S. tuberosum)

Expression of CNT0000474

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MIKEIKSQSLIKNRGNFKETNQITNPNSSKLIKKKRKREINQIPKNRERCCT*

>peptide 2 (31 aa)
MVLPVKVFTKICICSITNRTIKNRAKSQTMI*

>peptide 3 (33 aa)
SKYQPLLIWRDTLLVLDLGLDIINGVRGFDLEG*

>peptide 4 (33 aa)
MVSEDSTSRGDGLTGQSFHEDLHLFNHKQNHKK*

Sequence

>CNT0000474
CAGCAAATATCAACCTCTGCTGATCTGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGGATTCGACCTCGAGGGG
TGATGGTCTTACCGGTCAAAGTTTTCACGAAGATCTGCATCTGTTCAATCACAAACAGAACCATAAAAAATAGAGCTAAATCACAAACAATGATTTAAAA
CAGAGAAGTTTCTGCTTACAACCAAACGGATTACACAATCAATAAACCACAAACCCTATTTTCCAAAATGACAACTCGCAAACCCTAAACCTTAATTAAA
ACAGGGAAAGATTTTGCATATCAGAAACTGAGTGCACAATAAATCAAACCAAGAAAGAACCATGATTCTTCAAATATGATAAAAGAAATTAAATCGCAGA
GCCTAATTAAGAACCGGGGAAATTTTAAAGAAACAAATCAGATCACGAACCCTAATTCCTCAAAACTGATAAAAAAAAAAAGAAAGAGAGAAATCAATCA
GATACCTAAGAACAGGGAAAGATGTTGCACTTAACAAACGATTTACGGAATCAGAAAGGCGAATGAAAAGTTTCGGATTCGACGACAACAAAAAAGATAT
ACAGATTGACGTAACAAACACAAATCGAAAAAATTGAAGTGTAATTAGGAGAAAAATCAATAAACGAAGGCTAATAAGGTTGCTATTACGAAAAGAATGA
ACAAGAGAGAGAGGAAACCAGAGACGTACCTTTAGGAGGAGAAGAATCGAACGATGAAGAAATGAGAATTAGGTTTAAACAATTAGGAATTG

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G16000.1 Uncharacterized protein protein coding CNT0000474 190 140 CDS Trans
GLYMA10G39780.1 Polyubiquitin protein coding CNT0000474 210 127 CDS Trans
GLYMA10G39780.1 Polyubiquitin protein coding CNT0000474 200 123 CDS Trans
GLYMA17G04690.1 Uncharacterized protein protein coding CNT0000474 842 313 CDS_UTR Cis
GLYMA17G04690.1 Uncharacterized protein protein coding CNT0000474 886 376 CDS Cis
GLYMA17G04701.1 Uncharacterized protein protein coding CNT0000474 257 172 CDS Trans
GLYMA17G04701.2 Uncharacterized protein protein coding CNT0000474 257 172 CDS Trans