Detailed information on CNT0001509 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005984, E-value = 7e-28 (V. vinifera)
CNT0042639, E-value = 9e-18 (A. thaliana)
CNT0018989, E-value = 4e-14 (Z. mays)
CNT0022204, E-value = 2e-22 (A. trichopoda)
CNT0031477, E-value = 6e-16 (O. sativa)
CNT0013103, E-value = 1e-29 (S. tuberosum)
CNT0037993, E-value = 4e-14 (S. moellendorffii)

Expression of CNT0001509

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)66.96678.18891.565974.23343.2113.44812.5938.284160.255157.205188.61179.702188.707477.431481.654leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)05010015020025030035040045050055060065070075080085090095010001…1050

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MTFYAVMALMMILRSSGEGSFHLDFSLALLV*

>peptide 2 (54 aa)
RRPDPSKGLGFRIFHYKYPNKGFVATRSHSGIVFFRKFAIVEGSARAFVVQDES*

Sequence

>CNT0001509
CCCGACGACCCGACCCATCAAAGGGGTTAGGGTTTCGCATTTTCCACTATAAATACCCAAACAAGGGGTTTGTCGCCACACGTTCACATTCAGGAATCGT
TTTCTTCAGAAAATTTGCCATCGTTGAGGGAAGCGCGAGAGCCTTCGTTGTTCAAGATGAGAGCTAAGTGGAAGAAGAAGCGCATGAGGAGGTTGAAGAG
GAAGCGCCGAAAGATGAGACAAAGATCTAAGTAGGTGCTTGAACAAGGAGTGGAGATGATGTGCTTTTCCATCTGCTACCAGCTTCATGACATTTTATGC
TGTCATGGCTCTTATGATGATCTTGAGGTCTAGTGGCGAGGGGAGCTTCCATCTTGACTTTAGTTTAGCTTTACTGGTCTAAAGATTGCTGTTTTAGTGT
GGGTTAAGTTATGATATTGAGAGTTTTGTGTTATCTAATTATGTACTGGTACGTTTTGTATACTTTTTGGTTTATCTTAATAGCTTAAATATTAGTATTT
TGAGACGTGCATGAAAATTTGATCCTTTTTATGCATTATGTGACGACGCCTAAATCCTAATCATCAGCTCATATTAAATCATGTTTTGTGTGTAATTAGT
TTTATGTAGTGTTATAATTTCTTTTTTGAGATAGTTATGCATAATTATTTTGTATTAGGATATGTATCAATGAATTTTACGCTGAAGTGGGTGTCATGAA
TGTAAAATATATTTTGCACACAACCAAACAAAATTATTGCC