Detailed information on CNT0002248 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P49158|ACCD_SOYBN, E-value = 3e-111

BLAST vs NONCODE (A. thaliana):
NONATHT003814, E-value = 2e-23

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005926, E-value = 1e-18 (V. vinifera)
CNT0040393, E-value = 1e-21 ()
CNT0035158, E-value = 2e-10 (P. patens)
CNT0017270, E-value = 1e-36 ()
CNT0021643, E-value = 1e-70 (A. trichopoda)
CNT0024794, E-value = 2e-57 (O. sativa)
CNT0016675, E-value = 4e-89 (S. tuberosum)

Expression of CNT0002248

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.90.7471.0680.6783.6094.576.0783.8180.761.2640.8720.6350.6233.1490.069leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.5

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MELEKKKTSLYLIFFILSLFFLFDFDSLLYSLFFYFLVSFFLFLQPKSPAST*

>peptide 2 (82 aa)
MKILIKKTKIIYIFLKNKMFVMLNIFNLVCICIHSILYSSSFFSAKLPEAYAFLNPIVDIMPVIPLLFFLLAFVWQAAVSFR*

>peptide 3 (38 aa)
MIYIMNGYALGRKDSNLRIVGPKPVALPLGHAPFSILY*

>peptide 4 (33 aa)
MYSHWMKNKIIEIFHFEYSISCIYYKKVYKSNN*

>peptide 5 (44 aa)
MKINSVFYQSIFYSLFRICKVEKWEFKNIRKKEKNYKIEKIIKL*

>peptide 6 (30 aa)
MLWVNILIFHLLIFSVKEPNETKVSCSVLN*

>peptide 7 (41 aa)
QRINTIFIRFLFGMKFNRIQRNHVFIHRIPSTRINRKFDSI*

>peptide 8 (47 aa)
MLIFFTFIEIIRTFSYSGITIICIIRTSYYTSTRIITFTTISALKKM*

>peptide 9 (49 aa)
MNRPRERGDKREKSFRNLYTSHPHPPFFISLMKFRLLIRAKFHKNTSPF*

>peptide 10 (47 aa)
MLYHINKKRKKWSLKKKRLLFILFFLSYLFFFYLISIHYYILYSSIF*

>peptide 11 (36 aa)
MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE*

>peptide 12 (44 aa)
MCIYISIYIYLDIDRIRLNLLIITYNSIKILYRSVIYSIFFISE*

Sequence

>CNT0002248
CAAAGAATCAATACGATCTTTATAAGGTTCCTCTTCGGAATGAAATTCAATAGGATCCAGAGAAACCATGTCTTCATCCATAGGATTCCAAGTACCCGAA
TCAATCGAAAGTTTGATTCTATCTGAACTGCCCATTTTCAAATGATATCCACAGTATTCACAAATATTCATTTTTGATTTAATTTTTTTTTATAATTTAA
TCCATAACAATTTTCGCATTCAAGCCACAAATGCTTATATTTTTTACTTTCATCGAGATTATTAGAACTTTCTCCTATAGTGGAATCACTATCATTTGTA
TCATTCGTACTAGTTATTATACTAGTACTAGAATTATCACTTTCACTACAATTTCTGCCCTTAAAAAAATGTAACTATAAAAATAAATATCATTGTATTT
GTCAATATCACCTAAATTGAAACTCTCAATGCAACTATCAATGAAACTAGTAATATTATTGTTAAAACTAAATTGAGTCTCATACATGTAATGATCATCA
TCATTCTTAGAAACAGTATTCAGATCGCTAGAAAAAAAACCTTCCATTTCTAAATAATCCAAATCCTTGTGAATTTTTTTTTCTATATCGGTTAAAATTT
TAGGGTCTTCCCTTAGACTGGTATTTTCAATAGGACCAAGACTATCCATTGATTTACTTAATTCACACCTGTATTCTAACTTCCTATTAAACAACATAGA
ATTAAACCACCATTTTCCATCGAGTTTTTCCTCTATTTACACCAAAATATAATGAATGTATAGTCATTGGATGAAGAATAAAATAATAGAAATATTCCAT
TTTGAATATTCTATCTCATGTATTTACTATAAAAAAGTATATAAATCAAATAACTAGGATTAGTAACTGAAAATAATGAAGAGCGAGTTGGTATTAAAAA
GAAATGATAATAAAAAAAAATAATAAGAAACATTAAAAAAAAAGCACCTCAATAGGGGTAATCTATTTATCTATTTATAAGTCCAATTACTTCATTTAGT
GACTATTTTTTTTTCTTTTTCCTATATTCTATCTTTTATCTCTATACATTTTTTCATTTTGTTTTGAAGATCGATGCAAATTTCATTTCTTTTTCTGGCT
ATAGAAAACTACATCCTATCATTCTTTATAAACAACAAGAAATAAGAAAAATTAGGTATGAATAGACCAAGAGAGCGGGGGGATAAAAGAGAAAAGAGTT
TTAGAAATCTATATACAAGTCATCCACACCCCCCTTTTTTTATTTCATTAATGAAATTTCGTTTGTTGATTCGAGCTAAGTTCCATAAAAACACCAGCCC
TTTTTGAAATATCCTGAACAGTTCCTGTAGGTTAAGCGCCTCGTTCAAGGAAATATAGAATAACATGAATATTTAAATAGGTTTGATTCTTTATTGGATC
ATAAAAACCCACTTTCCGAAGATCTCTTCCCTCTCTTCGAGATCGAACATCGATTGCAACGATTCGATAAACGGCTCGTTGCTTTTTACCACATCGTTTC
AAACGAAGTTTTACCATAACATTCCTTTAGCTTGGATCCAGTATGTAATTGATTCAATTATGGAATCATGAATAGTCATTGATTCAATTGATACATACTA
ATCTATCCTTTTTAGGTCAGGGTTTTTCTTCTATATAACGAAAACTTTTTTTAAAGTAAAGACGTAAATGAAAATTAACTCGGTATTTTATCAATCTATT
TTCTACTCTCTTTTTAGAATTTGTAAAGTAGAAAAATGGGAATTTAAAAATATTAGAAAAAAAGAAAAAAATTATAAAATTGAAAAAATTATAAAATTAT
AATAGATATATATAATGAAATGATTACATTAAAACAATTTTTATACAAAAAAGAAAGTAACAAAAACTCGACTTGTTTTTGAATCCACATATTCGAAAGC
AAGTCGATTTAGATTAGAGACGAATAATTCAAAAAGGGGGATAATTTTAATTCTGATATACAATTTGTATTCCAATATGATATACATCATGAATGGATAT
GCTCTGGGACGGAAGGATTCGAACCTCCGAATAGTGGGACCAAAACCCGTTGCCTTACCACTTGGTCACGCCCCATTTTCGATTTTATACTAATAAACAC
TATTATTTATATTGGTTGTTCGTCAATTCCAGTTCAAAAATTTCTATAGAAAAATTTGTTGCTAGTATTTTTATATGTGTATCTACATATCTATCTATAT
CTATCTAGATATAGATAGGATAAGACTCAATTTATTGATCATTACGTACAATTCTATTAAGATATTGTATAGAAGTGTGATTTATTCAATTTTTTTTATT
TCAGAATAAAAAAAGATTTTGAACTAGATAAGTTCAAATCAAAGAAGGATTTTGGAGGGTTTTATCTTATTTTATTCATTTTTTTTAGTTTTATTCATAA
ATTAATATTAATTTCTTTTCCTTTTTATTGTATTATATATATATATATATATATATATATATATATATATATATATATATATATAAAATACAATAAAAAT
GAAAATTCTAATTAAAAAAACAAAAATAATTTATATTTTCTTAAAGAACAAAATGTTTGTTATGCTTAATATCTTTAATTTGGTCTGTATTTGTATTCAC
TCCATCCTTTATTCAAGTAGTTTTTTCTCGGCGAAATTGCCTGAAGCCTACGCTTTCTTGAATCCAATTGTGGATATTATGCCAGTAATACCCTTACTCT
TTTTTCTTTTAGCTTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATGAGATCTGTAATTTGAGTAATGTCTTAAAAAAATTAAGAATTTATCAGAAAACTA
AAATTCGAACATTTTAACAATTTAAAAGATCAAATAAGTCTTACAGTGTGAATTATCGATTCCAATATTGAAATTTTTGGATATATACAAAAAAATACGG
ACCATCTCATCATCTACATTTTGCCAATTGAGAAGTCCTAATCCTATTATTCAATTTGAACCCATCACCAATAGAATACCTAGATTATAGATATGAAAGA
ATATTTTTGGTAAAAGTAATTATTGATAATTTTTAATAAAAGATTCGACTCTTACTACAAATCCATTTTCGAAACTTATCTTATATATCTCCTCACAAAA
ATTTAATTTTTTAGAAACTTAATATCAAAAGAAACAAAATTTGTTGTAATATAAGAGAATTTATTCTCTTTCTTTGTCGTTTTTTAATTATCTTGGAGAT
TTTATAATGCTTACTCTAAAACTATTTGTTTACACGGTAGTGATATTCTTCGTTTCTCTTTTCATCTTCGGATTCCTATCTAACGATCCAGGACGTAATC
CAGGGCGTGAAGAATAAGAAAAAGATGGATTCTGTGTTTTTCTTGCTTGTGCTGGATTTAAAAAAAATTTAGGATTTTCTTTATTTTAACATCTTTAACC
AGTAAATAAAAAAATCAAACAAACAAGGAAAACAAAGAAGTCAACAAAAAATATCAAATTATCAACGGAAAGAGAGGGATTCGAACCCTCGGTACAAAAA
TTTGTACAACGGATTAGCAATCCGACGCTTTAGTCCACTCAGCCATCTCTCCCCAATTGAAAAATAGAATTACTTTGTTTATGTTATATCACATAAACAA
GAAGCGCAAAAAATGGAGCTTGAAAAAAAAAAGACTTCTCTTTATCTTATTTTTTTTATCTTATCTCTTTTTTTTCTATTTGATTTCGATTCATTATTAT
ATTCTTTATTCTTCTATTTTTTAGTTTCCTTTTTTCTTTTTCTACAGCCAAAGAGTCCGGCTAGTACCTAGTCGGGCTCTTTTTATTCCCATGAATATTG
AATAACAATGATTTATTTGAATTGAATGTACTTTATTAAAAAAAAATACCTTCAACAAAAACAAAATCCAAAAATGTAATTCACCCCGTTTTTCAAATTT
CATTAGAAGATACTCTAATTAAACATGTCAATACTCGAATTATTAGAATATTGAATATTATGCCCCTCTATTTCTTTATTGATTTTGTCTGATTGCTTTG
TTCGACAAAAGATACAATAATTGTATTGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGATTCGTTCCATGGACCCCTAAATAGTTAAGGGATCCCCCGTT
TGATTCATATTCCGATCAAAAACTTTATTTCTTACTTAAAGGGAATCCTTTATACCCTCAATGAATGATTTGCGGTATAATATACATTATCGTAATTTGT
ATACAAGAAGAATCAATTCTAAATTGACAACTTGAGTTCTAAAATTATGAAACATAAGTTTTTGGAATTGGATCTATAATCCGAATTTTTTTTAGTATGA
CGAAAGGATCTATGGAGAGATATATAGAAAGTTTATTTCTAATCGTAACTAAATCTTCCATTTTTTTGTATAGTAGATATTGAAGCAAAATAGCTATTAA
ACGATTCTTTTAGTTTACTAGAGACATCTACATTTTTTTAGCTCGACAGAAATTTTATACTTTTCCTAAAGATTCTATTAAATAGAAATAGAGAACGAAG
TAACTAGAAAAAAACAGATTATTATAATACTGCTCTTCTAGAGGGATCATCTAAAAAGCAAGATGTTTTAAACTTATTCATACAAAACAAAAAGGCTGAC
ATAGATGTTATGGGTCAATATTTTGATTTTCCATCTCTTAATTTTTTCTGTAAAGGAGCCGAATGAAACAAAAGTTTCATGTTCGGTTTTGAATTAGAGA
TGTTAAATTGAAATCAAAATGATGAATCAACGTCGACTATAACCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCCCGCTACCCG