Detailed information on CNT0002300 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9M9L0|APC11_ARATH, E-value = 8e-18

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007009, E-value = 2e-20 (V. vinifera)
CNT0042380, E-value = 1e-21 (A. thaliana)
CNT0022405, E-value = 1e-14 (A. trichopoda)
CNT0010904, E-value = 8e-10 (S. tuberosum)

Expression of CNT0002300

Peptides detected in this lncRNA

>peptide 1 (41 aa)
HPFSEPLCCSSAIFSPPHAHFVPQPHAHRLSSSNGTGVRCY*

>peptide 2 (30 aa)
LTHSLSHCVVLQPFSPHLTHILSLNHTHIV*

>peptide 3 (29 aa)
MNFFGNWNLKLESWCRHPMLIYSHSTLET*

>peptide 4 (37 aa)
MLLLLGLGMHKKKHVRFVGWPLMDVVLTVNFLETTAR*

Sequence

>CNT0002300
CTCACCCATTCTCTGAGCCATTGTGTTGTTCTTCAGCCATTTTCTCCCCACCTCACGCACATTTTGTCCCTCAACCACACGCACATCGTCTAAGTTCTTC
AAACGGTACTGGTGTTCGTTGTTATTAGATTAGAAGCCATCGAAAGGTTTTCCACGCTTCCAACCTTGGCTCGTGAAACAGGCAAAGGAAATGGAGCAGA
GGTTAGCAAACACAAGGAGAATGCCTCTTAACGATAAGAAATTCATAGAAATTGCTCTCCTTTCTGACCTCTGAGTCGACGGTCGTCGCCCCTCCGACTA
CTGCAAGCTCACTGTCAAACTGGCCAAGCAAGACAGCTCCGTGGAGGTTCATTTGGGCCAAACCCACGTTATGACCTTCGTCACCGCCCAACTCAGTAGT
GTTTATCTCTTAATCCTCAAGTCCTTTTGTGAAATATAGATGACATGTTGTTGCTTCTTGGACTTGGGATGCACAAGAAGAAACATGTGAGATTTGTAGG
ATGGCCTTTGATGGATGTTGTCCTGACTGTAAACTTCCTGGAGACGACTGCCCGCTGAGTCATTGCTGATAACTTAGTTGCACTTTGCTTTCTATTTTCA
CTTGACTGCAGTTGAACAAATCTATACTCACATCACAGGCGAGTAGCATATTTAATTTTGATTTTGAAATATGATTTCTTTTGATCATTTTACTATGAAC
CCTCAATGAATTTTTTTGGGAATTGGAATTTGAAACTTGAAAGTTGGTGTAGACATCCAATGCTTATATATTCCCATAGTACCTTGGAGACTTAAAAGTT
ACAGTTGCTCTTGTTATAAATTTCTTGAAACCAAAATCTGACAAGGCTTGGATTCACTAAGCTGCTTATTTTGTAAACTCACATAATTGAGACCATGTTT
TCATATGCTTGGACTCAACAAAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGCTCAGATGAACATTCATGGAAGAAATCCAG
AGATTTGCTTGAGAAGGTTGGTAGACAAGGAGATCTAACTGGTTATAGAGTTTCTTGTCTCCTTATTGGCGCAAAGGATGATTTAACTCCATATCCAAGG
GCAGTACAAGATTCAGTTAAGGTAAAATAAGCATGATTCAATGCCACAATATTGAATTTTGT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA06G36893.1 Uncharacterized protein protein coding CNT0002300 492 174 CDS Trans