Detailed information on CNT0002995 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005984, E-value = 1e-38 (V. vinifera)
CNT0042639, E-value = 4e-23 (A. thaliana)
CNT0018989, E-value = 9e-18 (Z. mays)
CNT0022204, E-value = 6e-25 (A. trichopoda)
CNT0031477, E-value = 9e-21 (O. sativa)
CNT0011141, E-value = 2e-34 (S. tuberosum)
CNT0037993, E-value = 1e-10 (S. moellendorffii)

Expression of CNT0002995

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)47.40751.11556.048402.64229.0614.0567.1423.535100.74893.827102.24981.941123.325204.369257.258leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0255075100125150175200225250275300325350375400425

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MFLFPNVTIHFYWFLLLLSYLKKDALTAN*

Sequence

>CNT0002995
TCCCTCTCGAAAACTAAATTACATTAAAACATACAAGTTATAACCCATGCCATGAATTGGGCCTCATAAAAACACAATGGGCCGGGCCATCCTGATGTGT
TTTGAAGTTGAAATGTTGGAAACCCATGGGGCCACGGGTTTACGATTGAAGCCCAATTAGCTAGGGTTTTGGTTCGCTATAAATTCCTGAAACGTAGCTC
GACCCTGCTCCCAACCTCCGTTATCAAAACGCAGCCAAGTCTCTGTTCTGTATTCTAGGGTTTGGATTCTGAGTTTCGTTTCAGTTTTTGATCACCATGA
GAGCTAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAGTGTGCTTGTTTCCCCAGCAACTATTG
CTACTAGTTTTGTTTTATTTCAGCTATGTTTTTGTTTCCAAATGTTACGATACATTTTTATTGGTTTCTCTTGCTTTTGTCTTACCTCAAAAAAGATGCT
CTTACCGCAAATTAATTAGATTTAATATTTGAATCTATTGTTCTCTCGTGCTTGTTTTGGTTTAACCATTCTGGAATTTCGATATTTCGCACTTTCGCGC
ATTACACTGTACATAAGGTGCCATTTTTTTGAAGAATTAATTAACTGCAATTGTTTGGTCCCTGTTCTTGACTATGTTAAAGTCCAGGTTGAATAAAACA
AC