Common name: Red rice
Latin name: Oryza punctata
Genome assembly: AVCL00000000
All retrocopies: 46
Parental genes: 46

Summary: Number of retrocopies :
Conserved ORF: 44 ORF 2 ORF

# RetrogeneDB ID Identity Coverage ORF conservation
1. retro_opun_1 68.14 % 63.61 % ORF
2. retro_opun_2 63.47 % 92.36 % ORF
3. retro_opun_3 68.19 % 96.91 % ORF
4. retro_opun_4 58.82 % 50.25 % ORF
5. retro_opun_5 66.24 % 72.90 % ORF
6. retro_opun_6 64.16 % 77.94 % ORF
7. retro_opun_7 61.15 % 51.85 % ORF
8. retro_opun_8 57.58 % 55.17 % ORF
9. retro_opun_9 73.99 % 74.39 % ORF
10. retro_opun_10 54.23 % 57.40 % ORF
11. retro_opun_11 56.52 % 90.39 % ORF
12. retro_opun_12 59.85 % 73.00 % ORF
13. retro_opun_13 54.20 % 91.41 % ORF
14. retro_opun_14 59.52 % 77.14 % ORF
15. retro_opun_15 51.09 % 96.48 % ORF
16. retro_opun_16 53.74 % 89.68 % ORF
17. retro_opun_17 64.33 % 61.26 % ORF
18. retro_opun_18 83.42 % 94.74 % ORF
19. retro_opun_19 71.51 % 52.50 % ORF
20. retro_opun_20 81.11 % 82.60 % ORF
21. retro_opun_21 80.50 % 99.44 % ORF
22. retro_opun_22 57.22 % 79.18 % ORF
23. retro_opun_23 68.89 % 80.77 % ORF
24. retro_opun_24 64.34 % 59.65 % ORF
25. retro_opun_25 71.61 % 70.00 % ORF
26. retro_opun_26 51.62 % 73.54 % ORF
27. retro_opun_27 66.80 % 99.86 % ORF
28. retro_opun_28 78.26 % 52.44 % ORF
29. retro_opun_29 58.13 % 82.33 % ORF
30. retro_opun_30 59.79 % 59.29 % ORF
31. retro_opun_31 68.35 % 51.05 % ORF
32. retro_opun_32 54.98 % 65.93 % ORF
33. retro_opun_33 66.41 % 71.20 % ORF
34. retro_opun_34 69.33 % 79.43 % ORF
35. retro_opun_35 74.83 % 100.00 % ORF
36. retro_opun_36 72.48 % 95.28 % ORF
37. retro_opun_37 74.85 % 51.26 % ORF
38. retro_opun_38 52.18 % 94.59 % ORF
39. retro_opun_39 70.97 % 97.99 % ORF
40. retro_opun_40 50.69 % 84.59 % ORF
41. retro_opun_41 72.85 % 95.01 % ORF
42. retro_opun_42 58.10 % 88.03 % ORF
43. retro_opun_43 71.79 % 97.91 % ORF
44. retro_opun_44 61.46 % 92.08 % ORF
45. retro_opun_45 64.42 % 94.44 % ORF
46. retro_opun_46 63.46 % 90.43 % ORF
# Ensembl ID Symbol Description
1. OPUNC03G36000 NAD(P)-binding Rossmann-fold superfamily protein [Source:Projected from Arabidopsis thaliana (AT5G58490) TAIR;Acc:AT5G58490]
2. OPUNC08G01190
3. OPUNC02G02130
4. OPUNC02G13140 regulatory particle triple-A ATPase 3 [Source:Projected from Arabidopsis thaliana (AT5G58290) TAIR;Acc:AT5G58290]
5. OPUNC07G14400
6. OPUNC05G01050
7. OPUNC04G19720
8. OPUNC03G26460
9. OPUNC08G04420
10. OPUNC04G26560 Putative oryzain beta chain [Source:UniProtKB/TrEMBL;Acc:G9C2Y3]
11. OPUNC01G09850
12. OPUNC07G17520
13. OPUNC05G00800
14. OPUNC08G11340
15. OPUNC09G08360 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:Projected from Arabidopsis thaliana (AT2G38740) TAIR;Acc:AT2G38740]
16. OPUNC03G13130
17. OPUNC07G20150
18. OPUNC01G35260
19. OPUNC04G26930
20. OPUNC02G01640
21. OPUNC02G27250
22. OPUNC05G14950
23. OPUNC04G04310
24. OPUNC03G02420
25. OPUNC01G37500
26. OPUNC01G02400
27. OPUNC05G02190
28. OPUNC01G32810
29. OPUNC01G21870
30. OPUNC01G29700
31. OPUNC02G29860
32. OPUNC04G21880
33. OPUNC03G11550
34. OPUNC12G04770
35. OPUNC08G10350
36. OPUNC02G23460
37. OPUNC06G17690
38. OPUNC01G20010
39. OPUNC01G40860
40. OPUNC03G14590
41. OPUNC04G21280
42. OPUNC07G06140 hexokinase 3 [Source:Projected from Arabidopsis thaliana (AT1G47840) TAIR;Acc:AT1G47840]
43. OPUNC08G14380
44. OPUNC02G08590
45. OPUNC05G12230 Mov34/MPN/PAD-1 family protein [Source:Projected from Arabidopsis thaliana (AT5G23540) TAIR;Acc:AT5G23540]
46. OPUNC03G01760
Retrogenes FASTA BED
TSV (download all or selected columns from MySQL table)
Parental genes FASTA BED
TSV (download all or selected columns from MySQL table)