Parental gene:

OPUNC08G10350

Aliases:None
Description:None
Organism:Red rice (Oryza punctata)
Coordinates:8:14913750..14924837(-)


>OPUNC08G10350
ATGGCGAGCGACGGGCAGCTCAGGGACTGGGTCTCCGACAAGCTCATGTCCCTCCTCGGCTATTCCAAGAGCGTCGTCGT
GCAGTACGTCATCAGGCTGGCGAAGGAGTGCTCTTCCACCGGCGACCTCGTGGGGAAGCTCGTCGAATTTGGGTTCACGT
CGTCCGCGGAGACTCGGAGCTTCGCCTCGGACATCTACGCCAAGGTTCCCCGGAAGGCCAGCGGTATCAGCAATTACCAG
AAACAGGAAAGGGAGGCAGCAAAGCTTGTGAAGAAACAGAGCACTTACAAACTGTTGTCTGATGAGGAGGACAACGATGC
TGAAACCATCACATCGACGAGTCGACAGAGCTCCGCGAGTACGTCCTCTAAGAGTAGAAAGCATTTTAGGAGGAAAGCTG
AAGACCAGGACGATGGGAAATATGATGATGAAACAACAATAAAACAGGATTCTGGGAGGAATGTGAAAAGACGAACAGAA
GAGGTGGATGATGAAGATGATGATAATGATACTGATGAAGAGCAAGAAAGGATAAAAGATCAGCAGGAAAGAGCTCAGCT
AGAAAAGAACATGAGAGAAAGAGATGCAGCGAACACTCGAAAGTTGATGGAGCGACAATTATCTAAGGAGGAACAAGAGG
AGATCACCAGGAGATCTCAAGCAATGGACAAGAATGACACTTCAGATCTTAGAAAATTTTCAAGGCAAGCCTACTTACAG
AAGAGAAGGGACAAAAAAATCGATGAGATCAGGGATGAAATTCTAGATCATGAGTACATTTTTCAGGATGTGAAACTAAC
TGAAGCAGAAGAAAAGGAATTCAGATACAAAAAGAAGATCTATGATCTTGTCAAGGAACATGTTGAGAGTGCAGATGATG
TTGCTGAGTACAAAATGCCTGAAGCTTATGACATGGGTGACAGTGTCAATCAAGAAAAGAGATTCTCGGTAGCAATGCAG
CGGTACAAAGATCCTGAGGCTAGGGATAAAATGAATCCTTTTGCTGAACAAGAAGCATGGGAAGAACACCAAATAGGAAA
GTCTAAACTGCAATTTGGATCAAAAGATAGGAAGCGGTATTCTGATGATTATCAGTATGTATTCGAAGATGGCATTGATT
TTGTCAAATCATCAGTCATAGAAGGAACACAGCATGAAGAAGACTCAGATCAAGAGGATATCGATGAAAAGGATATGTTA
AAAAGGGAGCTCCAGGATGAGCGGAAAACTCTTCCAATCTATAAATTCAGGGATGAACTGCTCAAGGCTGTTGAAGAGTA
TCAGGTTATTGTCATAGTGGGAGAAACTGGCTCTGGTAAAACAACACAAATACCTCAGTATCTTCATGAAGCTGGATATA
CAGCAAAAGGAAAGGTTGCATGTACACAACCTCGTCGAGTTGCAGCAATGAGTGTTGCAGCAAGGGTGTCCCAAGAGATG
GGTGTTAAACTGGGACATGAGGTTGGCTACTCTATAAGGTTTGAGGATTGCACCTCTGAGAAAACATTGATTAAGTATAT
GACTGATGGCATGCTTCTGAGGGAGTTTCTTGGTGAACCAGATTTGGCAAGCTATAGTGTTGTTATGGTTGATGAGGCTC
ATGAGCGCACACTGTCTACTGATATCTTATTTGGTTTGGTGAAGGATATTTCACGGTTTCGGCCAGATCTAAAGTTGCTC
ATTTCAAGTGCAACCCTTGATGCAGAAAAATTTAGTGACTACTTTGATTCAGCTCCTATTTTCAAGATACCTGGGAGGCG
ATACCCTGTTGAAGTTCATTATACAAAAGCTCCAGAAGCAGATTATATAGATGCAGCAATTGTCACTGTTTTGCAGATAC
ATGTGACACAACCCCCTGGTGATATCCTTGTATTCCTTACAGGACAAGAGGAAATTGAAACAATTGATGAAATCCTTAAA
CACAGAACAAGAGGCTTAGGCACAAAGATTGCAGAACTAATTATCTGTCCTATTTATGCAAATCTGCCAACTGAACTTCA
AGCTAAGATATTTGAGCCCACCCCAGAGGGTGCTCGGAAGGTTGTTCTGGCCACTAATATAGCAGAGACTTCATTGACCA
TTGATGGTATAAAGTATGTCATTGATCCAGGCTTTTGTAAGATCAAGTCATACAACCCCCGAACAGGAATGGAATCTCTA
CTTATCAACCCTATCTCAAAGGCATCAGCAAACCAGAGAGCAGGAAGATCTGGACGTACTGGACCAGGAAAATGCTTCCG
CCTGTACACAAGTTATAACTACATGCATGACCTTGAGGATAATACTGTTCCAGAGATTCAAAGAACCAACCTTGCAAATG
TTGTGCTTACTCTTAAGAGTCTTGGTATTCATGACTTGGTTAATTTTGATTTTATGGATCCACCTCCATCAGAGGCTCTA
TTAAAGGCCCTGGAACAACTCTTTGCTCTCAGTGCACTCAACAGTCGTGGAGAATTGACCAAGACTGGCAGAAGAATGGC
AGAGTTTCCACTGGACCCTATGTTGTCAAAGATGATAGTAGCTTCAGAGAAATATAAGTGCTCTGATGAGGTCATCTCCA
TTGCATCCATGTTGTCAGTTGGCAATTCTATATTCTATCGTCCAAAGGACAAACAAGTGCATGCAGACAATGCAAGGTTG
AACTTCCACACTGGCAATGTTGGGGATCATATAGCTCTACTCAATGTTTACAACTCATGGAAAGAAACAGACTATTCAAC
ACAGTGGTGCTATGAAAACTATATACAGGTCCGTAGCATGAAGAGAGCAAGAGATATTCGCGATCAACTGGAGGGACTTC
TAGAAAGAGTTGAGATTGAGATTTCTTCGAACGCCAGTGACTTGGATGCTATTAAAAAGGCTATAACATCAGGTTTCTTC
CATCATTCTTCACGGTTGCAGAAGAATGGTTCATATAGAACTGTTAAGAACCCTCAAACCGTACTTCCTCGGTGGGTGAT
ATACCATGAATTAGTCCTTACAACAAAAGAATATATGCGTCAGGTAACGGAACTGAAGCCCGACTGGCTGGTAGAAATAG
CGCCACACTATTATCAATTAAAAGACGTTGATGACACTGGGACTAAGAAGCTGCCTAAGGGCCAAGGACGAGCTGCATTG
TAA

Species Parental gene accession Homology type Retrogenes number
Oryza sativa indica BGIOSGA027162 ortholog_one2one 1 retrogene
retro_oind_65,
Brassica oleracea Bo5g087070 ortholog_many2many 1 retrogene
retro_bole_7,
Brassica rapa Bra010168 ortholog_many2many 1 retrogene
retro_brap_26,
Brachypodium distachyon BRADI1G61220 ortholog_one2one 1 retrogene
retro_bdis_4,
Glycine max GLYMA06G21821 ortholog_many2many 1 retrogene
retro_gmax_7,
Leersia perrieri LPERR08G09260 ortholog_one2one 1 retrogene
retro_lper_14,
Hordeum vulgare MLOC_5589 ortholog_one2one 1 retrogene
retro_hvul_14,
Oryza meridionalis OMERI08G09070 ortholog_one2one 1 retrogene
retro_omer_5,
Oryza nivara ONIVA08G11780 ortholog_one2one 1 retrogene
retro_oniv_26,
Oryza glaberrima ORGLA08G0098600 ortholog_one2one 1 retrogene
retro_ogla_26,
Oryza rufipogon ORUFI08G12410 ortholog_one2one 1 retrogene
retro_oruf_44,
Solanum tuberosum PGSC0003DMG402024649 ortholog_many2many 1 retrogene
retro_stub_33,
Prunus persica PRUPE_ppa000714mg ortholog_many2many 1 retrogene
retro_pper_32,
Sorghum bicolor Sb04g022460 ortholog_one2many 1 retrogene
retro_sbic_37,
Setaria italica Si021302m.g ortholog_one2one 1 retrogene
retro_sita_41,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opun_23 68.89 80.77
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Download FASTA sequences of all OPUNC08G10350 retrocopies