Common name: Rice subsp. japonica
Latin name: Oryza sativa japonica
Genome assembly: IRGSP-1.0
All retrocopies: 74
Parental genes: 58

Summary: Number of retrocopies :
Conserved ORF: 59 ORF 15 ORF

# RetrogeneDB ID Identity Coverage ORF conservation
1. retro_osat_1 82.09 % 97.32 % ORF
2. retro_osat_2 52.91 % 85.86 % ORF
3. retro_osat_3 71.24 % 89.12 % ORF
4. retro_osat_4 61.09 % 55.95 % ORF
5. retro_osat_5 56.33 % 73.87 % ORF
6. retro_osat_6 73.19 % 95.53 % ORF
7. retro_osat_7 66.79 % 83.17 % ORF
8. retro_osat_8 58.92 % 90.71 % ORF
9. retro_osat_9 68.40 % 56.29 % ORF
10. retro_osat_10 64.55 % 90.29 % ORF
11. retro_osat_11 71.98 % 72.19 % ORF
12. retro_osat_12 58.47 % 92.36 % ORF
13. retro_osat_13 51.18 % 74.62 % ORF
14. retro_osat_14 70.73 % 96.68 % ORF
15. retro_osat_15 53.72 % 69.00 % ORF
16. retro_osat_16 60.34 % 61.39 % ORF
17. retro_osat_17 62.91 % 91.13 % ORF
18. retro_osat_18 79.83 % 86.94 % ORF
19. retro_osat_19 66.42 % 92.91 % ORF
20. retro_osat_20 95.66 % 78.20 % ORF
21. retro_osat_21 52.10 % 69.76 % ORF
22. retro_osat_22 72.29 % 89.74 % ORF
23. retro_osat_23 79.89 % 52.13 % ORF
24. retro_osat_24 92.63 % 67.86 % ORF
25. retro_osat_25 60.25 % 93.93 % ORF
26. retro_osat_26 52.65 % 89.29 % ORF
27. retro_osat_27 76.69 % 99.16 % ORF
28. retro_osat_28 94.92 % 100.00 % ORF
29. retro_osat_29 71.26 % 93.96 % ORF
30. retro_osat_30 69.06 % 90.42 % ORF
31. retro_osat_31 50.12 % 83.26 % ORF
32. retro_osat_32 70.50 % 98.92 % ORF
33. retro_osat_33 73.51 % 100.00 % ORF
34. retro_osat_34 71.49 % 87.06 % ORF
35. retro_osat_35 84.42 % 77.53 % ORF
36. retro_osat_36 53.45 % 79.82 % ORF
37. retro_osat_37 69.11 % 59.32 % ORF
38. retro_osat_38 73.48 % 69.88 % ORF
39. retro_osat_39 57.49 % 86.02 % ORF
40. retro_osat_40 67.92 % 94.14 % ORF
41. retro_osat_41 63.59 % 77.78 % ORF
42. retro_osat_42 65.03 % 71.35 % ORF
43. retro_osat_43 73.41 % 97.30 % ORF
44. retro_osat_44 57.64 % 92.87 % ORF
45. retro_osat_45 58.84 % 66.39 % ORF
46. retro_osat_46 79.13 % 99.80 % ORF
47. retro_osat_47 51.09 % 96.48 % ORF
48. retro_osat_48 51.89 % 91.41 % ORF
49. retro_osat_49 68.35 % 53.96 % ORF
50. retro_osat_50 63.64 % 51.04 % ORF
51. retro_osat_51 90.79 % 99.35 % ORF
52. retro_osat_52 84.57 % 98.17 % ORF
53. retro_osat_54 96.46 % 68.29 % ORF
54. retro_osat_55 84.57 % 98.17 % ORF
55. retro_osat_56 82.72 % 98.17 % ORF
56. retro_osat_57 84.87 % 92.68 % ORF
57. retro_osat_60 52.43 % 58.65 % ORF
58. retro_osat_61 67.19 % 53.78 % ORF
59. retro_osat_62 59.00 % 51.72 % ORF
60. retro_osat_66 95.05 % 60.98 % ORF
61. retro_osat_67 84.57 % 98.17 % ORF
62. retro_osat_70 54.55 % 92.00 % ORF
63. retro_osat_71 84.57 % 98.17 % ORF
64. retro_osat_73 84.77 % 92.07 % ORF
65. retro_osat_74 84.57 % 98.17 % ORF
66. retro_osat_75 84.57 % 98.17 % ORF
67. retro_osat_76 84.57 % 98.17 % ORF
68. retro_osat_77 85.09 % 98.17 % ORF
69. retro_osat_78 55.09 % 58.44 % ORF
70. retro_osat_80 81.05 % 92.68 % ORF
71. retro_osat_81 63.04 % 83.64 % ORF
72. retro_osat_82 61.73 % 87.64 % ORF
73. retro_osat_87 84.57 % 98.17 % ORF
74. retro_osat_90 84.57 % 98.17 % ORF
# Ensembl ID Symbol Description
1. OS04G0473025
2. OS03G0638800
3. OS01G0579900
4. OS02G0744900 CHLP Geranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6Z2T6]
5. OS07G0559700 Os07g0559700 protein; Putative monosaccharide transporter 3 [Source:UniProtKB/TrEMBL;Acc:Q6Z401]
6. OS02G0709000 Exonuclease-like; Putative exonuclease [Source:UniProtKB/TrEMBL;Acc:Q8S3S6]
7. OS04G0492100 Os04g0492100 protein [Source:UniProtKB/TrEMBL;Acc:Q0JC49]
8. OS02G0604000 Os02g0604000 protein; Putative lipase [Source:UniProtKB/TrEMBL;Acc:Q6K8J1]
9. OS01G0742500 HXK6 Hexokinase-6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LQ68]
10. OS07G0631100 Transcription elongation factor 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8LHP0]
11. OS11G0573800
12. OS04G0567200 OSJNBa0005N02.7 protein; Os04g0567200 protein [Source:UniProtKB/TrEMBL;Acc:Q7XSA0]
13. OS01G0681400
14. OS01G0559600 Os01g0559600 protein; Putative C13 endopeptidase NP1; cDNA clone:J013108L21, full insert sequence [Source:UniProtKB/TrEMBL;Acc:Q7F1B4]
15. OS03G0268600 Probable protein phosphatase 2C 30 [Source:UniProtKB/Swiss-Prot;Acc:Q84JI0]
16. OS08G0366100 Os08g0366100 protein; Putative ethylene-responsive transcriptional coactivator; cDNA clone:001-041-F01, full insert sequence; cDNA clone:J013060M10, full insert sequence [Source:UniProtKB/TrEMBL;Acc:Q6ZAE3]
17. OS04G0410700
18. OS05G0477600 EXPA4 Expansin-A4 [Source:UniProtKB/Swiss-Prot;Acc:Q0DHB7]
19. OS04G0233400 PIP2-6 Probable aquaporin PIP2-6 [Source:UniProtKB/Swiss-Prot;Acc:Q7XLR1]
20. OS06G0636600
21. OS08G0117300 40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:Q69UI1]
22. OS02G0127700 Ribose-phosphate pyrophosphokinase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6Z2L5]
23. OS05G0371200 Os05g0371200 protein; Putative 26S proteasome non-ATPase regulatory subunit 14; cDNA clone:006-302-D04, full insert sequence; cDNA clone:006-309-B06, full insert sequence; cDNA clone:J023062E06, full insert sequence [Source:UniProtKB/TrEMBL;Acc:Q60EW3]
24. OS07G0106200 Os07g0106200 protein; Putative monosaccharide transport protein MST1; cDNA clone:J033117G08, full insert sequence [Source:UniProtKB/TrEMBL;Acc:Q7EZD7]
25. OS01G0883800 20OX2 Gibberellin 20 oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0JH50]
26. OS10G0556100 EXPB4 Expansin-B4 [Source:UniProtKB/Swiss-Prot;Acc:Q94LR4]
27. OS01G0869800
28. OS05G0116000 Os05g0116000 protein; Putative legumin; cDNA clone:001-014-A11, full insert sequence; cDNA clone:J033092N18, full insert sequence [Source:UniProtKB/TrEMBL;Acc:Q65XA1]
29. OS08G0175000 Putative male fertility protein [Source:UniProtKB/TrEMBL;Acc:Q6Z4U1]
30. OS01G0205900 Os01g0205900 protein; Putative bacterial-induced peroxidase; cDNA clone:001-029-H05, full insert sequence; cDNA clone:001-205-B03, full insert sequence [Source:UniProtKB/TrEMBL;Acc:Q5QNM7]
31. OS02G0738600 GLU10 Endoglucanase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q6Z5P2]
32. OS01G0677000
33. OS03G0826600 Phosphoesterase family protein, putative, expressed; Putative phospholipase; cDNA clone:J033030C17, full insert sequence [Source:UniProtKB/TrEMBL;Acc:Q94GF2]
34. OS07G0176900 Os07g0176900 protein; Putative ribose-5-phosphate isomerase; cDNA clone:001-034-G01, full insert sequence [Source:UniProtKB/TrEMBL;Acc:Q6ZEZ2]
35. OS01G0543100 Os01g0543100 protein; cDNA clone:001-119-E09, full insert sequence [Source:UniProtKB/TrEMBL;Acc:Q0JM38]
36. OS02G0695800
37. OS01G0606000 SWEET6A Bidirectional sugar transporter SWEET6a [Source:UniProtKB/Swiss-Prot;Acc:Q8LR09]
38. OS03G0109300 LOGL3 Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H7U8]
39. OS09G0407700 cDNA, clone: J090085P19, full insert sequence [Source:UniProtKB/TrEMBL;Acc:A3BYP4]
40. OS02G0325100 Os02g0325100 protein; Putative 26S proteasome regulatory particle triple-A ATPase subunit3; cDNA clone:J023091H23, full insert sequence [Source:UniProtKB/TrEMBL;Acc:Q6Z875]
41. OS02G0227400 Putative poly(A) polymerase [Source:UniProtKB/TrEMBL;Acc:Q6H5Y8]
42. OS01G0550300 Os01g0550300 protein; Putative GDA2 protein [Source:UniProtKB/TrEMBL;Acc:Q5JK82]
43. OS06G0650100 RUB2 Ubiquitin-NEDD8-like protein RUB2 [Source:UniProtKB/Swiss-Prot;Acc:P0C031]
44. OS05G0279900 Os05g0279900 protein [Source:UniProtKB/TrEMBL;Acc:Q0DJH3]
45. OS12G0629600
46. OS04G0533500 Probable ascorbate-specific transmembrane electron transporter 2 [Source:UniProtKB/Swiss-Prot;Acc:Q7XMK3]
47. OS12G0637100 Expressed protein; Os12g0637100 protein; cDNA clone:001-014-G03, full insert sequence [Source:UniProtKB/TrEMBL;Acc:Q2QLL9]
48. OS02G0229400 Os02g0229400 protein; Putative hexose transporter; Tonoplast monosaccharide transporter 2 [Source:UniProtKB/TrEMBL;Acc:Q6H536]
49. OS03G0818200 NAD dependent epimerase/dehydratase family protein, expressed; Os03g0818200 protein; Putative cinnamoyl-CoA reductase [Source:UniProtKB/TrEMBL;Acc:Q84JG9]
50. OS01G0923300 Os01g0923300 protein [Source:UniProtKB/TrEMBL;Acc:C7IWB6]
51. OS04G0605100 OSJNBb0015N08.8 protein; Os04g0605100 protein; cDNA clone:006-212-C10, full insert sequence; cDNA clone:J023149N23, full insert sequence [Source:UniProtKB/TrEMBL;Acc:Q7XNY3]
52. OS06G0565900 Os06g0565900 protein [Source:UniProtKB/TrEMBL;Acc:Q0DBG8]
53. OS05G0112000 XB3 E3 ubiquitin-protein ligase XB3 [Source:UniProtKB/Swiss-Prot;Acc:Q65XV2]
54. OS04G0393900 Os04g0393900 protein [Source:UniProtKB/TrEMBL;Acc:Q0JDM3]
55. OS01G0837100
56. OS08G0206950
57. OS03G0719900 Os03g0719900 protein; Peptide transporter; Peptide transporter PTR2, putative, expressed; Putative peptide transporter 1; cDNA clone:J013116K11, full insert sequence [Source:UniProtKB/TrEMBL;Acc:Q93VE2]
58. OS01G0718700
Retrogenes FASTA BED
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Parental genes FASTA BED
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