Parental gene:

BT.58717, ENSBTAG00000002049

Aliases:None
Description:hydroxyacyl-coenzyme A dehydrogenase, mitochondrial [Source:RefSeq peptide;Acc:NP_001039799]
Organism:Cow (Bos taurus)
Coordinates:6:18459379..18502809(-)


>ENSBTAG00000002049
ATGGCTTTTGTAACCAGGCAGTTCGTGCGCTCCATGTCCTCCTCCTCCAGCGCCGCGGCCTCGGCGAAAAAAATCCTCGT
CAAGCACGTGACGGTCATCGGCGGTGGGCTGATGGGCGCCGGCATTGCCCAGGTTGCTGCAGCAACTGGCCACACAGTAG
TGTTGGTGGACCAAACAGAGGACATCCTGGAAAAATCTAGAAAGGGAATTGAGGAAAGTCTTCGGAAAGTGGCCAAGAAG
AAGTTTGCAGAAAACCCCAAGGGCGCTGATGAGTTTGTGGCGAAGACCCTGAGCAGCATATCGACCAGCACGGATGCAGC
ATCTGTGGTCCACAGCACAGACTTGGTGGTGGAGGCCATTGTAGAGAATCTGCAGATGAAGAACGAGCTGTTCAAGAGGC
TGGACAAGTTTGCCGCCGAACACACAATCTTTGCCAGCAACACTTCCTCTTTGCAGATCACAAGCCTAGCCAATTCCACC
ACCAGACAGGACCGATTCGCCGGGCTCCATTTCTTCAACCCAGTGCCTTTGATGAAGCTTGTGGAGGTCATTAAAACACC
AATGACCAGCCAGAAGACGTTTGAATCTCTGCTAGACTTCAGCAGAGCCCTGGGGAAGCATCCTGTTGCTTGCAAGGACA
CGCCTGGGTTTATCGTGAACCGTCTTCTGGTGCCGTACCTCATGGAAGCAGTCAGGCTGTGTGAGCGAGGTGAAGCATCC
AAGGAGGACATCGACATGGCGATGAAGCTGGGCGCCGGCTACCCCATGGGTCCGTTTGAGCTTCTCGATTATGTTGGGCT
GGATACTACGAAGTTCATCCTAGACGGTTGGCATGAAATGGACTCAAAGAACCCCCTGTTTCAGCCCTGCCCATCCTTGA
ATAAGCTGGTAGCAGAGAAAAAGTTTGGCAAGAAATCTGGAGAAGGATTTTACAAATACAAGTGA

Library Parental gene expression (RPM)
ERP005899_liver 183 .05 RPM
ERP005899_muscle 183 .23 RPM
SRP017611_brain 18 .77 RPM
SRP017611_kidney 242 .36 RPM
SRP017611_liver 47 .19 RPM
SRP030211_testis 23 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015938 ortholog_one2one 1 retrogene
retro_cjac_772,
Echinops telfairi ENSETEG00000013807 ortholog_one2one 1 retrogene
retro_etel_1694,
Felis catus ENSFCAG00000022260 ortholog_one2one 1 retrogene
retro_fcat_1225,
Homo sapiens ENSG00000138796 ortholog_one2one 1 retrogene
retro_hsap_1571,
Gorilla gorilla ENSGGOG00000004423 ortholog_one2one 1 retrogene
retro_ggor_1196,
Macaca mulatta ENSMMUG00000023254 ortholog_one2one 1 retrogene
retro_mmul_2217,
Nomascus leucogenys ENSNLEG00000012951 ortholog_one2one 1 retrogene
retro_nleu_1738,
Pongo abelii ENSPPYG00000014986 ortholog_one2one 1 retrogene
retro_pabe_1296,
Pan troglodytes ENSPTRG00000016351 ortholog_one2one 1 retrogene
retro_ptro_1058,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1111 98.41 100.00
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2. retro_btau_1685 85.08 100.00
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Download FASTA sequences of all ENSBTAG00000002049 retrocopies