Parental gene:

HADH, ENSCJAG00000015938

Aliases:None
Description:hydroxyacyl-CoA dehydrogenase [Source:HGNC Symbol;Acc:4799]
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:85582185..85629136(-)


>ENSCJAG00000015938
ATGGGCAGAGCGGGCCTCGAGGCCCCGCCCCCCCCTAGTGACGTCACAAAGACGTCGGGGGCGCGCAGGCGGCAGCGCTA
CTTGGGTCCCCGCCCCCAGAGGCTGGCTGTCTTCTGCTGCCTGCCGCGCGCGCTTTCCCCTCCCGCGTCCTGTCGCTGTC
GCCGCTGCTGCCGCACCATGGCCTTCGTCACAAGGCAGTTCGTGCGTTCCGTGTCCTCCTCGTCCACCGCCTCGGCCTCA
GTCAAGAAGATCATCGTCAAGCATGTGACGGTCATCGGCGGCGGGCTGATGGGCTCCGGCATCGCCCAGGTTGCTGCAGC
AACTGGTCACACAGTAGTGTTGGTAGACCAGACAGAGGACATCCTGGCAAAATCCAAAAAGGGAATTGAGGAAAGCCTTA
GGAAAGTGGCAAAGAAGAAGTTTGCAGAAGACCCTAAGGCTGGCGATGAATTTGTGGTGAAGACCCTGAGCAGCATAACG
ACCAGCACAGATGCAGCCTCCGTTGTCCACAGCACAGACTTGGTGGTGGAAGCCATTGCGGAGAATCTGCAGTTGAAAAA
TGAACTCTTCAAAAGGCTGGACAAGTTTGCTGCTGAACATACAATCTTTGCCAGCAACACTTCCTCCTTGCAGATTACAA
GCATAGCCAATGCCACCACTAGACAAGACCGATTCGCTGGCCTCCATTTCTTCAACCCAGTGCCCATGATGAAACTTGTG
GAGGTCATTAAAACACCAATGACCAGCCAGAAGACATTTGAATCTTTGGTAGACTTTACCAAAACCCTAGGAAAGCATCC
TGTTTCTTGCAAGGACACTCCTGGGTTTGTTGTGAACCGCCTCCTGGTTCCATACCTCATGGAAGCAATCAGGCTGTATG
AACGAGACTTCCAAACATGTGGTAGTTCTAACTTGGGTTTGGGCTTTTCTTTAAAAGGTGATGCATCCAAAGAAGACATT
GACACTGCTATGAAGTTAGGAGCTGGTTACCCCATGGGCCCATTTGAGCTTCTAGATTATGTCGGGCTGGATACTACGAA
GTTCATCGTAGATGGGTGGCATGAAATAGATGCGAAGAACCCATTGTTTCAGCCCAGCCCATCTTTGAATAAGCTGGTAA
CAGAGAACAAGTTGGGCAAGAAGACTGGAGAAGGATTTTACAAATACAAATGA

Library Parental gene expression (RPM)
SRP051959_spleen 11 .58 RPM
SRP051959_skeletal_muscle 14 .33 RPM
SRP051959_lymph_node 9 .98 RPM
SRP051959_lung 9 .84 RPM
SRP051959_liver 25 .47 RPM
SRP051959_kidney 22 .94 RPM
SRP051959_heart 24 .08 RPM
SRP051959_colon 10 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002049 ortholog_one2one 2 retrogenes
retro_btau_1111, retro_btau_1685,
Echinops telfairi ENSETEG00000013807 ortholog_one2one 1 retrogene
retro_etel_1694,
Felis catus ENSFCAG00000022260 ortholog_one2one 1 retrogene
retro_fcat_1225,
Homo sapiens ENSG00000138796 ortholog_one2one 1 retrogene
retro_hsap_1571,
Gorilla gorilla ENSGGOG00000004423 ortholog_one2one 1 retrogene
retro_ggor_1196,
Macaca mulatta ENSMMUG00000023254 ortholog_one2one 1 retrogene
retro_mmul_2217,
Nomascus leucogenys ENSNLEG00000012951 ortholog_one2one 1 retrogene
retro_nleu_1738,
Pongo abelii ENSPPYG00000014986 ortholog_one2one 1 retrogene
retro_pabe_1296,
Pan troglodytes ENSPTRG00000016351 ortholog_one2one 1 retrogene
retro_ptro_1058,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_772 65.52 82.48
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Download FASTA sequences of all ENSCJAG00000015938 retrocopies