Parental gene:

RBM17, ENSBTAG00000021951

Aliases:None
Description:splicing factor 45 [Source:RefSeq peptide;Acc:NP_001094553]
Organism:Cow (Bos taurus)
Coordinates:13:17486171..17509050(-)


>ENSBTAG00000021951
ATGTCCTTGTACGATGACCTGGGAGTGGAGACCAGTGACTCAAAAACAGAAGGCTGGTCCAAAAACTTCAAACTCCTGCA
GTCTCAGCTCCAGGTGAAGAAGGCAGCTCTCACTCAGGCCAAGAGCCAGAGGACAAAACAAAGTACAGTCCTTGCTCCAG
TAATCGACCTAAAGCGAGGCGGCTCTTCGGATGAGCGGCAGATCGTGGACACTCCACCGCACGTGGCTGCAGGCCTCAAG
GACCCTGTTCCCAGCGGGTTTTCTGCAGGAGAAGTTTTGATCCCCTTAGCTGATGAATATGATCCCATGTTTCCTAACGA
TTATGAGAAAGTAGTGAAGCGCCAAAGAGAGGAGCGACAGAGGCAGCGGGAGCTGGAAAGACAGAAGGAAATAGAAGAGA
GAGAAAAGCGGCGTAAAGACAGACATGAAGCTAGTGGGTTTTCCAGGCGACCTGATCCAGATTCTGATGAAGATGAAGAT
TATGAGCGAGAGAGGAGGAAAAGAAGTATGGGCGGAGCTGCCATTGCACCTCCCACGTCTCTTGTGGAGAAGGACAAAGA
ATTACCCCGAGACTTCCCTTATGAAGAGGATTCACGACCTCGCTCACAGTCTTCCAAAGCTGCTATTCCTCCCCCAGTGT
ACGAGGAACAAGACAGACCCCGATCCCCAACCGGCCCTGGCAACTCCTTCCTCGCCAACATGGGGGGCACGGTAGCACAT
AAAATCATGCAGAAGTACGGCTTCCGGGAAGGCCAGGGTCTCGGGAAGCATGAGCAGGGCCTGAGCACAGCGCTGTCGGT
GGAGAAGACCAGCAAGCGGGGCGGCAAGATCATTGTGGGCGACGCCACCGAGAAAGACGCAGCCAAGAAGTCAGATTCAA
ATCCATTAACTGAAATACTTAAGTGTCCTACCAAAGTGGTCCTACTCAGGAACATGGTTGGTGCAGGAGAGGTGGATGAA
GACTTGGAAGTAGAAACCAAGGAAGAGTGTGAAAAATATGGCAAAGTTGGAAAATGTGTGATATTTGAAATTCCTGGTGC
CCCTGATGATGAAGCAGTACGAATATTTTTAGAATTCGAGAGGGTTGAGTCAGCAATTAAAGCTGTTGTTGATCTGAATG
GGAGGTATTTTGGTGGACGGGTGGTCAAAGCATGTTTCTACAATTTGGATAAATTCAGGGTCCTGGATTTGGCAGAACAA
GTTTGA

Library Parental gene expression (RPM)
ERP005899_liver 16 .80 RPM
ERP005899_muscle 23 .65 RPM
SRP017611_brain 36 .63 RPM
SRP017611_kidney 32 .30 RPM
SRP017611_liver 10 .87 RPM
SRP030211_testis 57 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000005206 ortholog_one2one 1 retrogene
retro_cfam_844,
Callithrix jacchus ENSCJAG00000020573 ortholog_one2one 1 retrogene
retro_cjac_432,
Equus caballus ENSECAG00000008939 ortholog_one2one 1 retrogene
retro_ecab_547,
Erinaceus europaeus ENSEEUG00000013077 ortholog_one2one 1 retrogene
retro_eeur_390,
Homo sapiens ENSG00000134453 ortholog_one2one 1 retrogene
retro_hsap_1551,
Macropus eugenii ENSMEUG00000011347 ortholog_one2one 1 retrogene
retro_meug_438,
Macaca mulatta ENSMMUG00000015152 ortholog_one2many 2 retrogenes
retro_mmul_1209, retro_mmul_771,
Mus musculus ENSMUSG00000037197 ortholog_one2one 1 retrogene
retro_mmus_2855,
Otolemur garnettii ENSOGAG00000015687 ortholog_one2one 1 retrogene
retro_ogar_1119,
Pongo abelii ENSPPYG00000002067 ortholog_one2many 1 retrogene
retro_pabe_1284,
Pan troglodytes ENSPTRG00000002265 ortholog_one2one 1 retrogene
retro_ptro_1044,
Ictidomys tridecemlineatus ENSSTOG00000013591 ortholog_one2one 1 retrogene
retro_itri_1376,
Tursiops truncatus ENSTTRG00000001344 ortholog_one2one 1 retrogene
retro_ttru_1758,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_530 62.84 52.62
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2. retro_btau_1057 98.50 100.00
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Download FASTA sequences of all ENSBTAG00000021951 retrocopies