Parental gene:

MMU.12926, ENSMMUG00000015152

Aliases:None
Description:splicing factor 45 [Source:RefSeq peptide;Acc:NP_001244661]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:9:6372701..6401206(+)


>ENSMMUG00000015152
ATGTCCCTGTACGATGACCTAGGAGTGGAGACCAGTGACTCAAAAACAGAAGGCTGGTCCAAAAACTTCAAACTTCTGCA
GTCTCAGCTTCAGGTGAAGAAGGCAGCTCTCACTCAGGCAAAGAGCCAAAGGACGAAACAAAGTACAGTCCTCGCCCCAG
TCATTGACCTGAAGCGAGGTGGCTCCTCAGATGACCGGCAAATTGTGGACACGCCACCACATGTAGCAGCTGGGCTGAAG
GATCCTGTTCCCAGTGGGTTTTCTGCAGGGGAAGTTCTGATTCCCTTAGCTGACGAATATGACCCTATGTTTCCTAATGA
TTATGAGAAAGTAGTGAAGCGCCAAAGAGAGGAACGACAGAGACAGCGGGAGCTGGAAAGACAAAAGGAAATAGAAGAAA
GGGAAAAAAGGCGCAAAGACAGACATGAAGCAAGTGGGTTTGCAAGGAGACCAGATCCAGATTCTGATGAAGATGAAGAT
TATGAGCGAGAGAGGAGGAAAAGAAGTATGGGCGGCGCTGCCATTGCCCCACCCACTTCTCTGGTGGAGAAAGACAAAGA
GTTACCCCGAGATTTTCCTTATGAAGAGGACTCAAGACCTCGATCACAGTCTTCCAAAGCTGCCATTCCTCCCCCAGTGT
ACGAGGAACAAGACAGACCGAGATCTCCAACTGGGCCTAGCAACTCCTTCCTCGCTAACATGGGGGGCACGGTGGCGCAC
AAGATCATGCAGAAGTACGGCTTCCGGGAGGGCCAGGGTCTGGGGAAGCACGAGCAGGGGCTGAGCACCGCCTTGTCAGT
GGAGAAGACCAGCAAGCGTGGCGGCAAGATCATCGTGGGTGACGCCACAGAGAAAGATGCATCCAAGAAGTCAGATTCAA
ATCCACTGACTGAAATACTTAAGTGTCCTACTAAAGTGGTCCTACTAAGGAACATGGTTGGTGCGGGAGAGGTGGATGAA
GACTTGGAAGTTGAAACCAAGGAAGAATGTGAAAAATATGGCAAAGTTGGAAAATGTGTGATATTTGAAATTCCTGGTGC
CCCTGATGATGAAGCAGTACGGATATTTTTAGAATTTGAGAGAGTTGAATCAGCAATTAAAGCGGTTGTTGACTTGAATG
GGAGGTATTTTGGTGGACGGGTGGTAAAAGCATGTTTCTACAATTTGGACAAATTCAGGGTCTTGGATTTGGCAGAACAA
GTTTGA

Library Parental gene expression (RPM)
SRP007412_brain 43 .25 RPM
SRP007412_brain_prefrontal_cortex 32 .45 RPM
SRP007412_cerebellum 60 .12 RPM
SRP007412_heart 33 .09 RPM
SRP007412_kidney 40 .61 RPM
SRP007412_liver 19 .59 RPM
SRP007412_testis 56 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021951 ortholog_one2many 2 retrogenes
retro_btau_1057, retro_btau_530,
Canis familiaris ENSCAFG00000005206 ortholog_one2many 1 retrogene
retro_cfam_844,
Callithrix jacchus ENSCJAG00000020573 ortholog_one2one 1 retrogene
retro_cjac_432,
Equus caballus ENSECAG00000008939 ortholog_one2many 1 retrogene
retro_ecab_547,
Erinaceus europaeus ENSEEUG00000013077 ortholog_one2many 1 retrogene
retro_eeur_390,
Homo sapiens ENSG00000134453 ortholog_one2one 1 retrogene
retro_hsap_1551,
Macropus eugenii ENSMEUG00000011347 ortholog_one2many 1 retrogene
retro_meug_438,
Mus musculus ENSMUSG00000037197 ortholog_one2many 1 retrogene
retro_mmus_2855,
Otolemur garnettii ENSOGAG00000015687 ortholog_one2many 1 retrogene
retro_ogar_1119,
Pongo abelii ENSPPYG00000002067 ortholog_one2one 1 retrogene
retro_pabe_1284,
Pan troglodytes ENSPTRG00000002265 ortholog_one2one 1 retrogene
retro_ptro_1044,
Ictidomys tridecemlineatus ENSSTOG00000013591 ortholog_one2many 1 retrogene
retro_itri_1376,
Tursiops truncatus ENSTTRG00000001344 ortholog_one2many 1 retrogene
retro_ttru_1758,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_771 69.96 59.10
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2. retro_mmul_1209 68.85 59.35
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Download FASTA sequences of all ENSMMUG00000015152 retrocopies