Parental gene:

RBM17, ENSCJAG00000020573

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:4626516..4655915(+)


>ENSCJAG00000020573
ATGTCCCTGTACGATGACCTAGGAGTGGAGACCAGTGACTCAAAAACAGAAGGCTGGTCCAAAAACTTCAAACTTCTGCA
GTCTCAGCTTCAGGTGAAGAAGGCAGCTCTCACTCAGGCAAAGAGCCAAAGGACAAAACAAAGTACAGTTCTTGCCCCAG
TCATTGACCTAAAACGAGGTGGCTCCTCAGATGACCGGCAAATTGTGGACACTCCACCGCATGTAGCAGCTGGGCTGAAG
GATCCTGTTCCCAGTGGGTTTTCTGCAGGGGAAGTTCTGATTCCCTTAGCTGACGAATATGATCCTATGTTTCCTAATGA
TTATGAGAAAGTAGTGAAGCGCCAAAGAGAGGAACGACAGAGACAGCGGGAGCTGGAACGACAAAAGGAAATAGAAGAAA
GGGAGAAAAGGCGTAAAGACAGACATGAAGCAAGTGGGTTTTCAAGGAGACCAGATCCAGATTCTGATGAAGATGAAGAT
TATGAACGAGAGAGGAGGAAAAGAAGTATGGGCGGAGCTGCCATTGCCCCACCCACTTCTCTGGTAGAGAAAGACAAAGA
GTTACCCCGAGATTTTCCTTATGAAGAGGACTCAAGACCTCGATCACAGTCTTCCAAAGCTGCCATTCCTCCCCCTATGT
ATGAAGAACAAGACAGACCGAGATCTCCAACTGGGCCTAGCAACTCCTTCCTCGCTAACATGGGGGGCACAGTGGCGCAC
AAGATCATGCAGAAGTATGGCTTCCGGGAGGGCCAGGGTCTGGGGAAGCATGAGCAGGGGCTGAGCACCGCCTTGTCAGT
GGAGAAGACCAGCAAGCGTGGCGGCAAGATCATCGTGGGCGACGCCACAGAGAAAGATGCATCCAAGAAGTCAGATTCAA
ATCCACTGACTGAGATACTTAAGTGTCCTACTAAAGTGGTCCTCCTAAGGAACATGGTTGGTGCGGGAGAGGTGGATGAA
GACTTGGAAGTTGAAACCAAGGAAGAATGTGAAAAATATGGCAAAGTTGGAAAATGTGTGATATTTGAAATTCCTGGTGC
CCCCGATGATGAAGCAGTACGGATATTTTTAGAATTTGAGAGAGTTGAATCAGCAATTAAAGCGGTTGTTGACTTGAATG
GGAGGTATTTTGGTGGACGGGTGGTAAAAGCATGTTTCTACAATTTGGACAAATTCAGGGTCTTGGATTTGGCAGAGCAA
GTTTGA

Library Parental gene expression (RPM)
SRP051959_spleen 23 .36 RPM
SRP051959_skeletal_muscle 19 .83 RPM
SRP051959_lymph_node 23 .31 RPM
SRP051959_lung 24 .81 RPM
SRP051959_liver 18 .63 RPM
SRP051959_kidney 25 .54 RPM
SRP051959_heart 20 .86 RPM
SRP051959_colon 18 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021951 ortholog_one2one 2 retrogenes
retro_btau_1057, retro_btau_530,
Canis familiaris ENSCAFG00000005206 ortholog_one2one 1 retrogene
retro_cfam_844,
Equus caballus ENSECAG00000008939 ortholog_one2one 1 retrogene
retro_ecab_547,
Erinaceus europaeus ENSEEUG00000013077 ortholog_one2one 1 retrogene
retro_eeur_390,
Homo sapiens ENSG00000134453 ortholog_one2one 1 retrogene
retro_hsap_1551,
Macropus eugenii ENSMEUG00000011347 ortholog_one2one 1 retrogene
retro_meug_438,
Macaca mulatta ENSMMUG00000015152 ortholog_one2one 2 retrogenes
retro_mmul_1209, retro_mmul_771,
Mus musculus ENSMUSG00000037197 ortholog_one2one 1 retrogene
retro_mmus_2855,
Otolemur garnettii ENSOGAG00000015687 ortholog_one2one 1 retrogene
retro_ogar_1119,
Pongo abelii ENSPPYG00000002067 ortholog_one2one 1 retrogene
retro_pabe_1284,
Pan troglodytes ENSPTRG00000002265 ortholog_one2one 1 retrogene
retro_ptro_1044,
Ictidomys tridecemlineatus ENSSTOG00000013591 ortholog_one2one 1 retrogene
retro_itri_1376,
Tursiops truncatus ENSTTRG00000001344 ortholog_one2one 1 retrogene
retro_ttru_1758,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_432 69.71 50.12
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Download FASTA sequences of all ENSCJAG00000020573 retrocopies