Parental gene:

CHMP1A, ENSBTAG00000033331

Aliases:CHMP1A, PCOLN3
Description:charged multivesicular body protein 1a [Source:RefSeq peptide;Acc:NP_001178189]
Organism:Cow (Bos taurus)
Coordinates:18:14592687..14599518(-)


>ENSBTAG00000033331
ATGGACGACACCCTGTTCCAGCTGAAGTTCACGGCAAAGCAGCTGGAGAAGCTGGCCAAGAAGGCGGAGAAGGACTCCAA
GGCAGAGCAGGCCAAGGTGAAGAAGGCCCTTCAGCAGAAGAATGTAGAGTGTGCACGTGTGTATGCTGAGAACGCCATCC
GCAAAAAGAACGAAGGTGTGAACTGGCTCCGCATGGCGTCCCGCGTGGATGCCGTGGCCTCTAAGGTGCAGACAGCAGTG
ACCATGAAGGGGGTGACCAAGAACATGGCGCAGGTGACCAAAGCCCTGGACCGGGCCCTCAGCACCATGGACCTGCAGAA
GGTCTCTGCTGTGATGGACAGGTTCGAGCAGCAGGTGCAGAACCTGGATGTACACACGTCGGTGATGGAAGACTCCATGA
GCTCGGCCACCACGCTGACCACGCCACAGGAGCAGGTAGACAGCCTCATCCTGCAGATCGCGGAGGAGAACGGCCTGGAG
GTGCTGGACCAGCTCAGCCAGCTGCCTGAGGGCGCCTCTGCTGTGGGCGAGAGCTCCGTGCGCAGCCAGGAGGACCAGCT
GTCCCGGAGGTTGGCCGCCCTGAGGAATTAG

Library Parental gene expression (RPM)
SRP017611_brain 38 .92 RPM
SRP017611_kidney 35 .92 RPM
SRP017611_liver 26 .13 RPM
ERP005899_muscle 45 .19 RPM
ERP005899_liver 11 .25 RPM
SRP030211_testis 57 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001216 ortholog_one2one 1 retrogene
retro_amel_1749,
Canis familiaris ENSCAFG00000019822 ortholog_one2one 1 retrogene
retro_cfam_1866,
Callithrix jacchus ENSCJAG00000010826 ortholog_one2one 1 retrogene
retro_cjac_1147,
Homo sapiens ENSG00000131165 ortholog_one2one 2 retrogenes
retro_hsap_359, retro_hsap_75,
Macaca mulatta ENSMMUG00000014909 ortholog_one2one 3 retrogenes
retro_mmul_1325, retro_mmul_476, retro_mmul_706,
Mustela putorius furo ENSMPUG00000007281 ortholog_one2one 1 retrogene
retro_mputfur_383,
Mus musculus ENSMUSG00000000743 ortholog_one2one 1 retrogene
retro_mmus_2260,
Oryctolagus cuniculus ENSOCUG00000023371 ortholog_one2one 1 retrogene
retro_ocun_1508,
Otolemur garnettii ENSOGAG00000004883 ortholog_one2many 1 retrogene
retro_ogar_170,
Pongo abelii ENSPPYG00000007667 ortholog_one2one 1 retrogene
retro_pabe_344,
Pan troglodytes ENSPTRG00000008483 ortholog_one2one 2 retrogenes
retro_ptro_1278, retro_ptro_283,
Ictidomys tridecemlineatus ENSSTOG00000023813 ortholog_one2one 1 retrogene
retro_itri_1311,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1048 56.63 100.00
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Download FASTA sequences of all ENSBTAG00000033331 retrocopies