Parental gene:

CHMP1A, ENSOCUG00000023371

Aliases:None
Description:charged multivesicular body protein 1A [Source:HGNC Symbol;Acc:8740]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018998:261026..265052(-)


>ENSOCUG00000023371
ATGTCTTCCATCCGCGGGTGTGCTGCAACAGCCAGGTCTGGGCCAGGCCAAAGCCGGGAGTCTGGCGCTCCATCTGGTCT
CCCACGCAGGTGCAGGGGCCCAGCTGCCTGGACGTCTGCCGTTTCCCCGCACGTTAGCCAGGAGCTGGGTTGGAAAGTGC
AGTTGGCAAGACTCACCCTGCTGTGCCACGCCAGCCTTTCATGCTTACTCTCGTGGTCAGCCGGCGCCGCCGTCACACTC
CTAACGAGCACCGATACGCTGTTCCAGCTGAAGTTCACAGCAAAGCAGCTGGAGAAGCTGGCCAAGAAGGCGGAGAAGGA
CGCCAAGGCTGAGCAGGCCAGGGTGAAGAAGGCCCTGCAGCAGAAAAATGTGGAGTGCGCCCGTGTGTATGCTGAGAACG
CCATCCGCAAAAAGAACGAAGGCGTGAACTGGCTCCGCATGGCGTCCCGGGTGGACGCTGTGGCCTCCAAGGTGCAGACG
GCTGTGACCATGAAGGGGGTGACCAAGAACATGGCACAGGTGACCAAAGCCCTGGATAAGGCCCTGAGCACCATGGACCT
GCAGAAGGTCTCTGCCGTGATGGACAGGTTCGAGCAGCAGGTGCAGAACCTGGATGTGCACACGTCGGTGATGGAGGACT
CCATGAGCTCGGCCACCACGCTGACCACGCCTCAGGAGCAGGTCGACAGCCTCATTGTGCAGATTGCCGAGGAGAACGGG
CTGGAAGTCCTGGACCAGCTCAGCCAGCTGCCCGAGGGCGCCGCTGCCGTGGGGGAGAGCTCCACGCGCAGCCAGGAGGA
CCAGCTGTCGCGGAGGTTGGCCGCCTTGAGGAATTAG

Library Parental gene expression (RPM)
SRP017611_brain 26 .27 RPM
SRP017611_kidney 32 .43 RPM
SRP017611_liver 11 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001216 ortholog_one2one 1 retrogene
retro_amel_1749,
Bos taurus ENSBTAG00000033331 ortholog_one2one 1 retrogene
retro_btau_1048,
Canis familiaris ENSCAFG00000019822 ortholog_one2one 1 retrogene
retro_cfam_1866,
Callithrix jacchus ENSCJAG00000010826 ortholog_one2one 1 retrogene
retro_cjac_1147,
Homo sapiens ENSG00000131165 ortholog_one2one 2 retrogenes
retro_hsap_359, retro_hsap_75,
Macaca mulatta ENSMMUG00000014909 ortholog_one2one 3 retrogenes
retro_mmul_1325, retro_mmul_476, retro_mmul_706,
Mustela putorius furo ENSMPUG00000007281 ortholog_one2one 1 retrogene
retro_mputfur_383,
Mus musculus ENSMUSG00000000743 ortholog_one2one 1 retrogene
retro_mmus_2260,
Otolemur garnettii ENSOGAG00000004883 ortholog_one2many 1 retrogene
retro_ogar_170,
Pongo abelii ENSPPYG00000007667 ortholog_one2one 1 retrogene
retro_pabe_344,
Pan troglodytes ENSPTRG00000008483 ortholog_one2one 2 retrogenes
retro_ptro_1278, retro_ptro_283,
Ictidomys tridecemlineatus ENSSTOG00000023813 ortholog_one2one 1 retrogene
retro_itri_1311,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1508 53.69 73.02
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Download FASTA sequences of all ENSOCUG00000023371 retrocopies