Parental gene:

CHMP1A, ENSG00000131165

Aliases:CHMP1A, CHMP1, PCH8, PCOLN3, PRSM1, VPS46-1, VPS46A
Description:charged multivesicular body protein 1A [Source:HGNC Symbol;Acc:8740]
Organism:Human (Homo sapiens)
Coordinates:16:89710838..89724253(-)


>ENSG00000131165
ATGGACGATACCCTGTTCCAGTTGAAGTTCACGGCGAAGCAGCTGGAGAAGCTGGCCAAGAAGGCGGAGAAGGACTCCAA
GGCGGAGCAGGCCAAAGTGAAGAAGGCCCTTCTGCAGAAAAATGTAGAGTGTGCCCGTGTGTATGCCGAGAACGCCATCC
GCAAGAAGAACGAAGGTGTGAACTGGCTTCGGATGGCGTCCCGCGTAGACGCAGTGGCCTCCAAGGTGCAGACAGCTGTG
ACTATGAAGGGGGTGACCAAGAATATGGCCCAGGTGACCAAAGCCCTGGACAAGGCCCTGAGCACCATGGACCTGCAGAA
GGTCTCCTCAGTGATGGACAGGTTCGAGCAGCAGGTGCAGAACCTGGACGTCCATACATCGGTGATGGAGGACTCCATGA
GCTCGGCCACCACCCTGACCACGCCGCAGGAGCAGGTGGACAGCCTCATCATGCAGATCGCCGAGGAGAATGGCCTGGAG
GTGCTGGACCAGCTCAGCCAGCTGCCCGAGGGCGCCTCTGCCGTGGGCGAGAGCTCTGTGCGCAGCCAGGAGGACCAGCT
GTCACGGAGGTTGGCCGCCTTGAGGAACTAG

Library Parental gene expression (RPM)
bodymap2_adipose 43 .71 RPM
bodymap2_adrenal 44 .56 RPM
bodymap2_brain 19 .27 RPM
bodymap2_breast 38 .68 RPM
bodymap2_colon 32 .64 RPM
bodymap2_heart 14 .93 RPM
bodymap2_kidney 39 .50 RPM
bodymap2_liver 16 .43 RPM
bodymap2_lung 31 .45 RPM
bodymap2_lymph_node 34 .85 RPM
bodymap2_ovary 46 .77 RPM
bodymap2_prostate 43 .79 RPM
bodymap2_skeletal_muscle 32 .25 RPM
bodymap2_testis 47 .21 RPM
bodymap2_thyroid 46 .76 RPM
bodymap2_white_blood_cells 60 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001216 ortholog_one2one 1 retrogene
retro_amel_1749,
Bos taurus ENSBTAG00000033331 ortholog_one2one 1 retrogene
retro_btau_1048,
Canis familiaris ENSCAFG00000019822 ortholog_one2one 1 retrogene
retro_cfam_1866,
Callithrix jacchus ENSCJAG00000010826 ortholog_one2one 1 retrogene
retro_cjac_1147,
Macaca mulatta ENSMMUG00000014909 ortholog_one2one 3 retrogenes
retro_mmul_1325, retro_mmul_476, retro_mmul_706,
Mustela putorius furo ENSMPUG00000007281 ortholog_one2one 1 retrogene
retro_mputfur_383,
Mus musculus ENSMUSG00000000743 ortholog_one2one 1 retrogene
retro_mmus_2260,
Oryctolagus cuniculus ENSOCUG00000023371 ortholog_one2one 1 retrogene
retro_ocun_1508,
Otolemur garnettii ENSOGAG00000004883 ortholog_one2many 1 retrogene
retro_ogar_170,
Pongo abelii ENSPPYG00000007667 ortholog_one2one 1 retrogene
retro_pabe_344,
Pan troglodytes ENSPTRG00000008483 ortholog_one2one 2 retrogenes
retro_ptro_1278, retro_ptro_283,
Ictidomys tridecemlineatus ENSSTOG00000023813 ortholog_one2one 1 retrogene
retro_itri_1311,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_75 55.61 100.00
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2. retro_hsap_359 71.98 91.84
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Download FASTA sequences of all ENSG00000131165 retrocopies