Parental gene:

Chmp1a, ENSMUSG00000000743

Aliases:Chmp1a, 2900018H07Rik, Pcoln3
Description:charged multivesicular body protein 1A [Source:MGI Symbol;Acc:MGI:1920159]
Organism:Mouse (Mus musculus)
Coordinates:8:123204263..123212763(-)


>ENSMUSG00000000743
ATGGACGATACCCTGTTCCAGTTGAAGTTCACAGCGAAGCAGCTGGAGAAACTGGCCAAGAAGGCCGAGAAGGACTCCAA
GGCTGAGCAGGCCAAAGTGAAGAAGGCCCTTCAGCAGAAAAATGTGGAGTGTGCCCGGGTGTATGCTGAAAATGCCATCC
GCAAGAAGAATGAAGGTGTAAATTGGCTCCGAATGGCCTCCCGTGTGGACGCAGTGGCCTCCAAGGTGCAGACAGCTGTG
ACCATGAAGGGGGTGACCAAGAATATGGCCCAGGTGACCAAGGCTCTGGACAAGGCCCTGAGCGCCATGGACCTTCAGAA
GGTGTCTGCAGTGATGGACAGGTTTGAGCAGCAGGTGCAGAACCTGGATGTGCACACATCGGTAATGGAGGATTCCGTGA
GCTCTGCCACCACGCTGACCACGCCTCAGGAGCAGGTCGACAGCCTCATTGTCCAGATAGCTGAGGAAAACGGCCTGGAG
GTCCTAGACCAGCTCAGCCAGCTGCCAGAGGGAGCGTCTGCTGTGGGCGAGAGCTCTGTGCGCAGCCAGGAGGACCAGCT
GTCCCGGAGGTTGGCTGCCCTGAGGAATTAG

Library Parental gene expression (RPM)
SRP007412_brain 55 .39 RPM
SRP007412_cerebellum 33 .04 RPM
SRP007412_heart 47 .26 RPM
SRP007412_kidney 54 .05 RPM
SRP007412_liver 44 .79 RPM
SRP007412_testis 59 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001216 ortholog_one2one 1 retrogene
retro_amel_1749,
Bos taurus ENSBTAG00000033331 ortholog_one2one 1 retrogene
retro_btau_1048,
Canis familiaris ENSCAFG00000019822 ortholog_one2one 1 retrogene
retro_cfam_1866,
Callithrix jacchus ENSCJAG00000010826 ortholog_one2one 1 retrogene
retro_cjac_1147,
Homo sapiens ENSG00000131165 ortholog_one2one 2 retrogenes
retro_hsap_359, retro_hsap_75,
Macaca mulatta ENSMMUG00000014909 ortholog_one2one 3 retrogenes
retro_mmul_1325, retro_mmul_476, retro_mmul_706,
Mustela putorius furo ENSMPUG00000007281 ortholog_one2one 1 retrogene
retro_mputfur_383,
Mus musculus ENSMUSG00000031242 within_species_paralog 1 retrogene
retro_mmus_1735,
Oryctolagus cuniculus ENSOCUG00000023371 ortholog_one2one 1 retrogene
retro_ocun_1508,
Otolemur garnettii ENSOGAG00000004883 ortholog_one2many 1 retrogene
retro_ogar_170,
Pongo abelii ENSPPYG00000007667 ortholog_one2one 1 retrogene
retro_pabe_344,
Pan troglodytes ENSPTRG00000008483 ortholog_one2one 2 retrogenes
retro_ptro_1278, retro_ptro_283,
Ictidomys tridecemlineatus ENSSTOG00000023813 ortholog_one2one 1 retrogene
retro_itri_1311,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_2260 96.24 67.86
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Download FASTA sequences of all ENSMUSG00000000743 retrocopies