Parental gene: | RPL10A, ENSCAFG00000001318 |
| Aliases: | None |
| Description: | Canis lupus familiaris ribosomal protein L10a (RPL10A), mRNA. [Source:RefSeq mRNA;Acc:NM_001252145] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 12:4602064..4604111(+) |
>ENSCAFG00000001318
CGCAGCAGCAAAGTCTCCCGCGACACCCTGTACGAGGCGGTGCGGGAGGTCCTGCACGGGAACCAGCGCAAGCGCCGGAA
GTTTCTGGAGACGGTGGAGCTGCAGATCAGCCTGAAGAACTATGACCCTCAGAAGGACAAACGCTTCTCGGGCACCGTCA
GGCTTAAGTCCACCCCCCGCCCCAAGTTTTCTGTGTGTGTTTTGGGGGACCAGCAACACTGTGATGAGGCCAAGGCAGTG
GACATTCCCCACATGGACATTGAAGCGCTGAAGAAACTCAACAAGAATAAAAAACTAGTCAAAAAGCTGGCCAAGAAGTA
TGATGCCTTTTTGGCTTCAGAATCTCTGATCAAGCAGATTCCACGAATCCTGGGTCCAGGCCTGAATAAAGCTGGCAAGT
TCCCTTCCTTGCTGACCCACAATGAGAACATGGTGGCCAAAGTGGATGAAGTGAAGTCCACCATCAAATTCCAGATGAAG
AAGGTGCTATGTCTGGCAGTGGCTGTTGGCCACGTGAAGATGACGGACGATGAGCTTGTGTACAACATCCACTTAGCTGT
CAATTTCCTGGTGTCCTTGCTCAAGAAGAATTGGCAGAACGTCCGGGCTTTGTACATCAAGAGCACCATGGGCAAACCCC
AGCGCCTTTACTGA
CGCAGCAGCAAAGTCTCCCGCGACACCCTGTACGAGGCGGTGCGGGAGGTCCTGCACGGGAACCAGCGCAAGCGCCGGAA
GTTTCTGGAGACGGTGGAGCTGCAGATCAGCCTGAAGAACTATGACCCTCAGAAGGACAAACGCTTCTCGGGCACCGTCA
GGCTTAAGTCCACCCCCCGCCCCAAGTTTTCTGTGTGTGTTTTGGGGGACCAGCAACACTGTGATGAGGCCAAGGCAGTG
GACATTCCCCACATGGACATTGAAGCGCTGAAGAAACTCAACAAGAATAAAAAACTAGTCAAAAAGCTGGCCAAGAAGTA
TGATGCCTTTTTGGCTTCAGAATCTCTGATCAAGCAGATTCCACGAATCCTGGGTCCAGGCCTGAATAAAGCTGGCAAGT
TCCCTTCCTTGCTGACCCACAATGAGAACATGGTGGCCAAAGTGGATGAAGTGAAGTCCACCATCAAATTCCAGATGAAG
AAGGTGCTATGTCTGGCAGTGGCTGTTGGCCACGTGAAGATGACGGACGATGAGCTTGTGTACAACATCCACTTAGCTGT
CAATTTCCTGGTGTCCTTGCTCAAGAAGAATTGGCAGAACGTCCGGGCTTTGTACATCAAGAGCACCATGGGCAAACCCC
AGCGCCTTTACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 44 .22 RPM |
| SRP017611_kidney | 438 .62 RPM |
| SRP017611_liver | 194 .77 RPM |
| SRP012049_cerebellum | 184 .84 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000013325 | possible_ortholog | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000028140 | ortholog_one2one | 10 retrogenes | |
| Macropus eugenii | ENSMEUG00000005760 | ortholog_one2many | 6 retrogenes | |
| Myotis lucifugus | ENSMLUG00000000080 | ortholog_one2one | 10 retrogenes | |
| Monodelphis domestica | ENSMODG00000013766 | ortholog_one2many | 2 retrogenes | |
| Ornithorhynchus anatinus | ENSOANG00000014574 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000004065 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000018085 | ortholog_one2one | 13 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000002763 | ortholog_one2one | 9 retrogenes | |
| Rattus norvegicus | ENSRNOG00000000505 | possible_ortholog | 4 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000002047 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000023366 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_124 | 78.18 | 76.04 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_281 | 74.44 | 60.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_337 | 97.72 | 99.54 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_347 | 74.77 | 97.70 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_413 | 99.54 | 99.54 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cfam_847 | 75.58 | 99.08 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cfam_907 | 76.04 | 99.08 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cfam_911 | 93.60 | 93.09 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cfam_920 | 85.61 | 60.37 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_cfam_986 | 67.54 | 86.18 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_cfam_1118 | 85.45 | 99.54 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_cfam_1200 | 89.35 | 99.08 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_cfam_1222 | 83.96 | 97.70 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_cfam_1501 | 64.53 | 87.56 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_cfam_1775 | 64.77 | 79.26 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_cfam_1867 | 70.25 | 72.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 17. | retro_cfam_2002 | 86.70 | 91.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 18. | retro_cfam_2141 | 69.23 | 53.46 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000001318 retrocopies