Parental gene:

RPL10A, ENSCAFG00000001318

Aliases:None
Description:Canis lupus familiaris ribosomal protein L10a (RPL10A), mRNA. [Source:RefSeq mRNA;Acc:NM_001252145]
Organism:Dog (Canis familiaris)
Coordinates:12:4602064..4604111(+)


>ENSCAFG00000001318
CGCAGCAGCAAAGTCTCCCGCGACACCCTGTACGAGGCGGTGCGGGAGGTCCTGCACGGGAACCAGCGCAAGCGCCGGAA
GTTTCTGGAGACGGTGGAGCTGCAGATCAGCCTGAAGAACTATGACCCTCAGAAGGACAAACGCTTCTCGGGCACCGTCA
GGCTTAAGTCCACCCCCCGCCCCAAGTTTTCTGTGTGTGTTTTGGGGGACCAGCAACACTGTGATGAGGCCAAGGCAGTG
GACATTCCCCACATGGACATTGAAGCGCTGAAGAAACTCAACAAGAATAAAAAACTAGTCAAAAAGCTGGCCAAGAAGTA
TGATGCCTTTTTGGCTTCAGAATCTCTGATCAAGCAGATTCCACGAATCCTGGGTCCAGGCCTGAATAAAGCTGGCAAGT
TCCCTTCCTTGCTGACCCACAATGAGAACATGGTGGCCAAAGTGGATGAAGTGAAGTCCACCATCAAATTCCAGATGAAG
AAGGTGCTATGTCTGGCAGTGGCTGTTGGCCACGTGAAGATGACGGACGATGAGCTTGTGTACAACATCCACTTAGCTGT
CAATTTCCTGGTGTCCTTGCTCAAGAAGAATTGGCAGAACGTCCGGGCTTTGTACATCAAGAGCACCATGGGCAAACCCC
AGCGCCTTTACTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 184 .84 RPM
SRP017611_brain 44 .22 RPM
SRP017611_kidney 438 .62 RPM
SRP017611_liver 194 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000013325 possible_ortholog 2 retrogenes
retro_etel_1974, retro_etel_326,
Gorilla gorilla ENSGGOG00000028140 ortholog_one2one 10 retrogenes
retro_ggor_1, retro_ggor_1124, retro_ggor_1282, retro_ggor_1407, retro_ggor_2088, retro_ggor_2273, retro_ggor_234, retro_ggor_2702, retro_ggor_358, retro_ggor_57,
Macropus eugenii ENSMEUG00000005760 ortholog_one2many 6 retrogenes
retro_meug_1337, retro_meug_1578, retro_meug_2066, retro_meug_407, retro_meug_541, retro_meug_705,
Myotis lucifugus ENSMLUG00000000080 ortholog_one2one 10 retrogenes
retro_mluc_1053, retro_mluc_1526, retro_mluc_1611, retro_mluc_1815, retro_mluc_1963, retro_mluc_1964, retro_mluc_2519, retro_mluc_751, retro_mluc_902, retro_mluc_918,
Monodelphis domestica ENSMODG00000013766 ortholog_one2many 2 retrogenes
retro_mdom_276, retro_mdom_499,
Ornithorhynchus anatinus ENSOANG00000014574 ortholog_one2many 1 retrogene
retro_oana_86,
Oryctolagus cuniculus ENSOCUG00000004065 ortholog_one2one 2 retrogenes
retro_ocun_130, retro_ocun_4,
Pan troglodytes ENSPTRG00000018085 ortholog_one2one 13 retrogenes
retro_ptro_1157, retro_ptro_1293, retro_ptro_142, retro_ptro_167, retro_ptro_1892, retro_ptro_2041, retro_ptro_2134, retro_ptro_2193, retro_ptro_2681, retro_ptro_269, retro_ptro_2729, retro_ptro_2737, retro_ptro_994,
Pteropus vampyrus ENSPVAG00000002763 ortholog_one2one 9 retrogenes
retro_pvam_1107, retro_pvam_1223, retro_pvam_123, retro_pvam_1294, retro_pvam_1440, retro_pvam_345, retro_pvam_722, retro_pvam_775, retro_pvam_906,
Rattus norvegicus ENSRNOG00000000505 possible_ortholog 4 retrogenes
retro_rnor_2302, retro_rnor_37, retro_rnor_400, retro_rnor_43,
Sarcophilus harrisii ENSSHAG00000002047 ortholog_one2many 1 retrogene
retro_shar_438,
Ictidomys tridecemlineatus ENSSTOG00000023366 ortholog_one2one 3 retrogenes
retro_itri_1097, retro_itri_524, retro_itri_847,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_124 78.18 76.04
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2. retro_cfam_281 74.44 60.83
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3. retro_cfam_337 97.72 99.54
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4. retro_cfam_347 74.77 97.70
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5. retro_cfam_413 99.54 99.54
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6. retro_cfam_847 75.58 99.08
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7. retro_cfam_907 76.04 99.08
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8. retro_cfam_911 93.60 93.09
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9. retro_cfam_920 85.61 60.37
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10. retro_cfam_986 67.54 86.18
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11. retro_cfam_1118 85.45 99.54
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12. retro_cfam_1200 89.35 99.08
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13. retro_cfam_1222 83.96 97.70
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14. retro_cfam_1501 64.53 87.56
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15. retro_cfam_1775 64.77 79.26
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16. retro_cfam_1867 70.25 72.81
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17. retro_cfam_2002 86.70 91.24
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18. retro_cfam_2141 69.23 53.46
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Download FASTA sequences of all ENSCAFG00000001318 retrocopies