Parental gene:

RPL10A, ENSPTRG00000018085

Aliases:None
Description:ribosomal protein L10a [Source:HGNC Symbol;Acc:10299]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:35913128..35915505(+)


>ENSPTRG00000018085
ATGAGCAGCAAAGTCTCTCGCGACACCCTGTACGAGGCGGTGCGGGAAGTCCTGCACGGGAACCAGCGCAAGCGCCGCAA
GTTCCTGGAGACGGTGGAGTTGCAGATCAGCTTGAAGAACTATGACCCCCAGAAGGACAAGCGCTTCTCGGGCACCGTCA
GGCTTAAGTCCACTCCCCGCCCTAAGTTCTCTGTGTGTGTCCTGGGGGACCAGCAGCACTGTGACGAGGCTAAGGCCGTG
GATATCCCCCACATGGACATCGAGGCGCTGAAAAAACTCAACAAGAATAAAAAACTGGTCAAGAAGCTGGCCAAGAAGTA
TGATGCGTTTTTGGCCTCAGAGTCTTTGATCAAGCAGATTCCACGAATCCTCGGCCCAGGTTTAAATAAGGCAGGAAAGT
TCCCTTCCCTGCTCACACACAACGAAAACATGGTGGCCAAAGTGGATGAGGTGAAGTCCACAATCAAGTTCCAAATGAAG
AAGGTGTTATGTCTGGCTGTAGCTGTTGGTCACGTGAAGATGACAGACGATGAGCTTGTGTATAACATTCACCTGGCTGT
CAACTTCTTGGTGTCATTGCTCAAGAAAAACTGGCAGAATGTCCGGGCCTTATATATCAAGAGCACCATGGGCAAGCCCC
AGCGCCTATATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 141 .85 RPM
SRP007412_cerebellum 162 .07 RPM
SRP007412_heart 92 .39 RPM
SRP007412_kidney 279 .14 RPM
SRP007412_liver 160 .59 RPM
SRP007412_testis 43 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001318 ortholog_one2one 18 retrogenes
retro_cfam_1118, retro_cfam_1200, retro_cfam_1222, retro_cfam_124, retro_cfam_1501, retro_cfam_1775, retro_cfam_1867, retro_cfam_2002, retro_cfam_2141, retro_cfam_281, retro_cfam_337, retro_cfam_347, retro_cfam_413, retro_cfam_847, retro_cfam_907, retro_cfam_911, retro_cfam_920, retro_cfam_986,
Echinops telfairi ENSETEG00000013325 possible_ortholog 2 retrogenes
retro_etel_1974, retro_etel_326,
Gorilla gorilla ENSGGOG00000028140 ortholog_one2one 10 retrogenes
retro_ggor_1, retro_ggor_1124, retro_ggor_1282, retro_ggor_1407, retro_ggor_2088, retro_ggor_2273, retro_ggor_234, retro_ggor_2702, retro_ggor_358, retro_ggor_57,
Macropus eugenii ENSMEUG00000005760 ortholog_one2one 6 retrogenes
retro_meug_1337, retro_meug_1578, retro_meug_2066, retro_meug_407, retro_meug_541, retro_meug_705,
Myotis lucifugus ENSMLUG00000000080 ortholog_one2one 10 retrogenes
retro_mluc_1053, retro_mluc_1526, retro_mluc_1611, retro_mluc_1815, retro_mluc_1963, retro_mluc_1964, retro_mluc_2519, retro_mluc_751, retro_mluc_902, retro_mluc_918,
Monodelphis domestica ENSMODG00000013766 ortholog_one2one 2 retrogenes
retro_mdom_276, retro_mdom_499,
Ornithorhynchus anatinus ENSOANG00000014574 ortholog_one2one 1 retrogene
retro_oana_86,
Oryctolagus cuniculus ENSOCUG00000004065 ortholog_one2one 2 retrogenes
retro_ocun_130, retro_ocun_4,
Pteropus vampyrus ENSPVAG00000002763 ortholog_one2one 9 retrogenes
retro_pvam_1107, retro_pvam_1223, retro_pvam_123, retro_pvam_1294, retro_pvam_1440, retro_pvam_345, retro_pvam_722, retro_pvam_775, retro_pvam_906,
Rattus norvegicus ENSRNOG00000000505 possible_ortholog 4 retrogenes
retro_rnor_2302, retro_rnor_37, retro_rnor_400, retro_rnor_43,
Sarcophilus harrisii ENSSHAG00000002047 ortholog_one2one 1 retrogene
retro_shar_438,
Ictidomys tridecemlineatus ENSSTOG00000023366 ortholog_one2one 3 retrogenes
retro_itri_1097, retro_itri_524, retro_itri_847,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_142 78.17 64.52
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2. retro_ptro_167 81.35 88.94
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3. retro_ptro_269 81.46 69.12
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4. retro_ptro_994 81.29 70.51
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5. retro_ptro_1157 80.27 100.00
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6. retro_ptro_1293 64.67 82.95
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7. retro_ptro_1892 95.48 81.57
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8. retro_ptro_2041 81.73 89.40
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9. retro_ptro_2134 89.91 100.00
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10. retro_ptro_2193 72.64 96.77
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11. retro_ptro_2681 92.17 100.00
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12. retro_ptro_2729 80.73 100.00
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13. retro_ptro_2737 80.65 100.00
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Download FASTA sequences of all ENSPTRG00000018085 retrocopies