Parental gene:

TMEM30A, ENSCAFG00000002708

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:12:36898525..36932174(-)


>ENSCAFG00000002708
ATGATCAGGGTGCGTCCGCCTCTTCCCTCCCCCTTCCATCCTCCTCCCTTTCCCCCTCCCCCTGTCCCTCAGTTTTCTCC
CTCCTTCCTCTCTCCCTCCCTCTGGCGTCCCCAGCCGACTCCCGCTTCCGGTCGGCGGCCGTCTGCGGAAGGGTGTCCCG
CCTCTTCCTTACAGCGGAGGTGGCGGCGGCCGCGGCGCCTGCGCATCTTCTGTCAGGGTCGGCCGGCGGGTCCCCCGGGT
GGTCCACCTGCGCGTAGGGGAGCCGCGCCGTGGGGGTCGATGGCGATGAACTATAATGCGAAGGATGAAGTGGATGGTGG
GCCCCCGTGTGCTCCTGGGGCCACCGCTAAGAACCGGAGGCCGGATAACACGGCCTTCAAACAGCAACGGTTGCCGGCTT
GGCAGCCCATCCTTACGGCTGGCACGGTGCTACCTACCTTCTTCATCATCGGCCTCATCTTCATCCCCATTGGCATCGGC
ATCTTCGTCACCTCCAACAACATCCGCGAGATCGAGATTGATTATACCGGAACAGACCCTTCCAGTCCCTGCAATAAATG
TTTGTCTCCAAATGTGACACCTTGTATTTGTACCATTAACTTCACCCTGGAACAGTCATTTGAGGGCAATGTGTTTATGT
ATTATGGACTGTCTAATTTCTATCAAAACCATCGTCGTTATGTGAAGTCTCGAGATGATAGTCAGCTAAATGGAGATTCT
GGTGCTTTACTTAATCCCAGTAAGGAATGTGAGCCTTATCGAAGAAATGAAGACAAACCAATTGCTCCTTGTGGAGCTAT
TGCCAACAGCATGTTTAATGATACATTAGAATTGTTTCTTGTTGGCAATGAATCTTATCCTACACCTATTCCTTTGAAAA
AGAAAGGTATTGCTTGGTGGACTGATAAAAATGTAAAATTCAGAAATCCCCCTGGAGACCAAAGTCTAGAAGAACGATTC
AAAGGTACAACAAATCCAGTAAACTGGGTTAAGCCAGTGTACATGCTGGATTCTGAACCAGATAATAATGGGTTCATAAA
TGAGGATTTTATTGTTTGGATGCGTACTGCAGCATTACCTACTTTTCGTAAGTTATATCGTCTTATAGAGCGGAAAAGTG
ATTTACATCCAACATTACCAGCTGGACGATACTATTTGAATATCACATACAATTACCCCGTACATTCTTTTGATGGACGA
AAACGGATGATCTTAAGCACTATTTCATGGATGGGAGGAAAAAATCCATTTTTGGGGATTGCTTACATCGCTATTGGATC
CATCTCCTTCCTTCTCGGAGTTGTACTGCTAGTAATTAATCATAAATATAGAAACAGTAGTAATACTGCTGACATTACTA
TTTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 129 .69 RPM
SRP017611_brain 240 .24 RPM
SRP017611_kidney 112 .92 RPM
SRP017611_liver 47 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005100 ortholog_one2one 1 retrogene
retro_btau_72,
Callithrix jacchus ENSCJAG00000010325 ortholog_one2one 1 retrogene
retro_cjac_801,
Cavia porcellus ENSCPOG00000020712 ortholog_one2many 1 retrogene
retro_cpor_23,
Homo sapiens ENSG00000112697 ortholog_one2one 1 retrogene
retro_hsap_12,
Myotis lucifugus ENSMLUG00000011923 ortholog_one2one 1 retrogene
retro_mluc_1871,
Monodelphis domestica ENSMODG00000018502 ortholog_one2one 1 retrogene
retro_mdom_287,
Mus musculus ENSMUSG00000032328 ortholog_one2one 1 retrogene
retro_mmus_108,
Nomascus leucogenys ENSNLEG00000004962 ortholog_one2one 1 retrogene
retro_nleu_69,
Otolemur garnettii ENSOGAG00000015718 ortholog_one2one 1 retrogene
retro_ogar_22,
Pongo abelii ENSPPYG00000016782 ortholog_one2one 1 retrogene
retro_pabe_204,
Pelodiscus sinensis ENSPSIG00000007174 ortholog_one2one 1 retrogene
retro_psin_61,
Rattus norvegicus ENSRNOG00000010895 ortholog_one2one 1 retrogene
retro_rnor_399,
Ictidomys tridecemlineatus ENSSTOG00000002543 ortholog_one2one 1 retrogene
retro_itri_50,
Tarsius syrichta ENSTSYG00000008211 ortholog_one2one 1 retrogene
retro_tsyr_928,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_26 55.35 58.73
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Download FASTA sequences of all ENSCAFG00000002708 retrocopies