Parental gene:

TMEM30A, ENSCJAG00000010325

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:73530949..73566646(-)


>ENSCJAG00000010325
CACGCCCCAGTGATGGAGCCCCATTCTTTGGCGTCACAGTGGCGTCTCCAGCTGACTTTCGCTTCCTATCAGCGGCCTTC
GGCGGAAGAGTGTCCCACCTCTTCCGCTCGCTCGAGCGGCTCCTGTCAGGGTCAGCAGGCGGACCCCTTTGGTGGTCCAC
CTGCGCGTCGCGGAGCGGCGCCCCGGGGACCGATGGCGATGAACTATAACGCGAAGGATGAAGTGGACGGTGGGCCCCCT
TGTGCTCCGGGGGGCACCGCGAAGACCCGGAGACCGGATAACACGGCCTTCAAACAGCAACGGCTGCCTGCTTGGCAGCC
CATCCTCACGGCTGGCACGGTGCTACCTATTTTCTTCATCATCGGCCTCATCTTCATCCCCATTGGCATTGGAATCTTCG
TCACCTCCAACAATATCCGCGAGATCGAGATTGATTATACCGGAACAGAGCCTTCCAGTCCCTGCAATAAATGTTTATCT
CCGGATGTGACACCTTGCATTTGTACCATCAACTTCACACTGGAAAAGTCATTTGAGGGCAATGTGTTTATGTATTATGG
ACTGTCTAATTTCTATCAAAACCATCGTCGTTATGTGAAATCACGAGATGATAGTCAATTGAATGGAGATTCTAGTGCTT
TGCTTAATCCCAGTAAGGAATGTGAGCCTTATCGAAGAAATGAAGACAAACCAATTGCTCCTTGTGGAGCTATTGCCAAC
AGCATGTTTAATGATACATTAGAATTGTTTCTCATTGGCAATGATTCTTACCCTATGCCAATCGCTTTGAAAAAGAAAGG
TATTGCTTGGTGGACAGATAAAAATGTGAAATTCAGAAATCCCCCTGGAGGAGACAACAACCTAGAAGAACGATTTAAAG
GTACAACAAAGCCTGTGAACTGGCTTAAACCAGTTTACATGCTAGATTCGGACCAAGATAATAATGGATTCATAAATGAG
GATTTTATTGTTTGGATGCGTACTGCAGCATTACCTACTTTTCGCAAGTTATATCGTCTTATAGAACGGAAAAGTGATTT
ACACCCAACATTACCAGCTGGCCGATACTATTTGAATATCACATACAATTACCCTGTACATTATTTTGATGGACGCAAAC
GGATGATCTTGAGCACTATTTCATGGATGGGAGGAAAAAATCCATTTTTGGGGATTGCTTACATCGCTGTTGGATCCATC
TCCTTCCTTCTGGGAGTTGTACTGCTAGTAATTAATCATAAATATAGAAACAGTAGTAATACAGCTGACATTACCATTTA
G

Library Parental gene expression (RPM)
SRP051959_spleen 92 .48 RPM
SRP051959_skeletal_muscle 44 .62 RPM
SRP051959_lymph_node 58 .35 RPM
SRP051959_lung 81 .34 RPM
SRP051959_liver 74 .60 RPM
SRP051959_kidney 85 .68 RPM
SRP051959_heart 60 .11 RPM
SRP051959_colon 59 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005100 ortholog_one2one 1 retrogene
retro_btau_72,
Canis familiaris ENSCAFG00000002708 ortholog_one2one 1 retrogene
retro_cfam_26,
Cavia porcellus ENSCPOG00000020712 ortholog_one2many 1 retrogene
retro_cpor_23,
Homo sapiens ENSG00000112697 ortholog_one2one 1 retrogene
retro_hsap_12,
Myotis lucifugus ENSMLUG00000011923 ortholog_one2one 1 retrogene
retro_mluc_1871,
Monodelphis domestica ENSMODG00000018502 ortholog_one2one 1 retrogene
retro_mdom_287,
Mus musculus ENSMUSG00000032328 ortholog_one2one 1 retrogene
retro_mmus_108,
Nomascus leucogenys ENSNLEG00000004962 ortholog_one2one 1 retrogene
retro_nleu_69,
Otolemur garnettii ENSOGAG00000015718 ortholog_one2one 1 retrogene
retro_ogar_22,
Pongo abelii ENSPPYG00000016782 ortholog_one2one 1 retrogene
retro_pabe_204,
Pelodiscus sinensis ENSPSIG00000007174 ortholog_one2one 1 retrogene
retro_psin_61,
Rattus norvegicus ENSRNOG00000010895 ortholog_one2one 1 retrogene
retro_rnor_399,
Ictidomys tridecemlineatus ENSSTOG00000002543 ortholog_one2one 1 retrogene
retro_itri_50,
Tarsius syrichta ENSTSYG00000008211 ortholog_one2one 1 retrogene
retro_tsyr_928,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_801 55.17 60.80
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Download FASTA sequences of all ENSCJAG00000010325 retrocopies