Parental gene:

SPCS1, ENSCAFG00000008927

Aliases:None
Description:signal peptidase complex subunit 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:23401]
Organism:Dog (Canis familiaris)
Coordinates:20:37091798..37166263(-)


>ENSCAFG00000008927
ACAATGTGGCTAAATAGGTCTCCTAGCCCTGAGACTCACTCTCCTGCTGGGGCATGCCGGCCTTCTCAGCCAGCCATGCT
GGAGCATCTGAGCTCGCTCCCCACGCAGATGGATTACAAGGGCCAGAAGCTAGCTGAACAGATGTTTCAGGGAATTATTC
TTTTTTCCGCAATAGTTGGATTTATCTACGGGTACGTGGCCGAACAGTTTGGGTGGACTGTCTATATAGTTATGGCCGGA
TTTGCTTTTTCGTGTTTGTTGACACTTCCTCCATGGCCCATTTATCGCCGGCATCCCCTCAAGTGGTTACCTGTCCAAGA
CTCAGGTTCAGAAGACAAGAAACCGGGAGAAAGAAAAATTAAGAGGCATGCTAAAAATAAC

Library Parental gene expression (RPM)
SRP012049_cerebellum 35 .95 RPM
SRP017611_brain 34 .54 RPM
SRP017611_kidney 104 .01 RPM
SRP017611_liver 29 .15 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008426 ortholog_one2one 1 retrogene
retro_amel_1899,
Equus caballus ENSECAG00000023559 ortholog_one2many 1 retrogene
retro_ecab_86,
Erinaceus europaeus ENSEEUG00000007914 ortholog_one2one 1 retrogene
retro_eeur_25,
Homo sapiens ENSG00000114902 ortholog_one2one 1 retrogene
retro_hsap_294,
Gorilla gorilla ENSGGOG00000028027 ortholog_one2one 1 retrogene
retro_ggor_332,
Microcebus murinus ENSMICG00000014061 ortholog_one2one 1 retrogene
retro_mmur_292,
Myotis lucifugus ENSMLUG00000000744 ortholog_one2one 1 retrogene
retro_mluc_2104,
Macaca mulatta ENSMMUG00000017370 ortholog_one2one 1 retrogene
retro_mmul_549,
Otolemur garnettii ENSOGAG00000004106 ortholog_one2one 3 retrogenes
retro_ogar_2119, retro_ogar_2315, retro_ogar_2788,
Pongo abelii ENSPPYG00000013798 ortholog_one2one 1 retrogene
retro_pabe_380,
Pan troglodytes ENSPTRG00000015011 ortholog_one2one 1 retrogene
retro_ptro_241,
Tarsius syrichta ENSTSYG00000006854 ortholog_one2one 2 retrogenes
retro_tsyr_1359, retro_tsyr_599,
Tursiops truncatus ENSTTRG00000008576 ortholog_one2one 1 retrogene
retro_ttru_806,
Vicugna pacos ENSVPAG00000007380 ortholog_one2one 1 retrogene
retro_vpac_269,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_2079 69.75 92.13
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Download FASTA sequences of all ENSCAFG00000008927 retrocopies