Parental gene:

SPCS1, ENSPPYG00000013798

Aliases:None
Description:Signal peptidase complex subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5RF96]
Organism:Orangutan (Pongo abelii)
Coordinates:3:93626029..93628160(-)


>ENSPPYG00000013798
ATGGCGCGGGGCGGGGACACGGGCTGTACCGGCCCGTCGGAGACTTCCGCTTCCGGGGCCGTCGCCATCGCTTTCCCGGG
CTTAGAAGGCCCGCCTGCCGACGCGCAGTACCAGACCTTGGCCCTCACGGTCCCTAAGTCTTGGTCGCCCTCGCCTCGCA
GCCTGCCACCCGCGCTCAGCTGCCCGCCTCCTCAGCCAGCCATGCTGGAGCATCTGAGCTCGCTGCCCACGCAGATGGAT
TACAAGGGCCAGAAGCTAGCTGAACAGATGTTTCAGGGAATTATTCTTTTTTCTGCAATAGTTGGATTTATCTACGGGTA
CGTGGCTGAACAGTTCGGATGGACTGTCTATATAGTTATGGCCGGATTTGCTTTTTCATGTTTGCTGACACTTCCTCCAT
GGCCCATCTATCGCCGGCATCCTCTCAAGTGGTTACCTGTTCAAGAATCAAGCACAGACGACAAGAAACCAGGGGAAAGA
AAAATTAAGAGGCATGCTAAAAATAATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 24 .88 RPM
SRP007412_cerebellum 25 .54 RPM
SRP007412_heart 12 .10 RPM
SRP007412_kidney 33 .91 RPM
SRP007412_liver 28 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008426 ortholog_one2one 1 retrogene
retro_amel_1899,
Canis familiaris ENSCAFG00000008927 ortholog_one2one 1 retrogene
retro_cfam_2079,
Equus caballus ENSECAG00000023559 ortholog_one2many 1 retrogene
retro_ecab_86,
Erinaceus europaeus ENSEEUG00000007914 ortholog_one2one 1 retrogene
retro_eeur_25,
Homo sapiens ENSG00000114902 ortholog_one2one 1 retrogene
retro_hsap_294,
Gorilla gorilla ENSGGOG00000028027 ortholog_one2one 1 retrogene
retro_ggor_332,
Microcebus murinus ENSMICG00000014061 ortholog_one2one 1 retrogene
retro_mmur_292,
Myotis lucifugus ENSMLUG00000000744 ortholog_one2one 1 retrogene
retro_mluc_2104,
Macaca mulatta ENSMMUG00000017370 ortholog_one2one 1 retrogene
retro_mmul_549,
Otolemur garnettii ENSOGAG00000004106 ortholog_one2one 3 retrogenes
retro_ogar_2119, retro_ogar_2315, retro_ogar_2788,
Pan troglodytes ENSPTRG00000015011 ortholog_one2one 1 retrogene
retro_ptro_241,
Tarsius syrichta ENSTSYG00000006854 ortholog_one2one 2 retrogenes
retro_tsyr_1359, retro_tsyr_599,
Tursiops truncatus ENSTTRG00000008576 ortholog_one2one 1 retrogene
retro_ttru_806,
Vicugna pacos ENSVPAG00000007380 ortholog_one2one 1 retrogene
retro_vpac_269,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_380 66.12 70.41
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Download FASTA sequences of all ENSPPYG00000013798 retrocopies