Parental gene:

HNRPDL, ENSCAFG00000008940

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:32:6404204..6407845(-)


>ENSCAFG00000008940
ATGGAGGTCCCGCCCCGGCTCTCCCATGTGCCGCCGCCATTGTTCCCCTCCGCTCCCGCGACTTTAGCCTCCCGCAGCCT
TTCCCATTGGCGGCCGCGGGCGCCGCGGCAGCTCGCCCCGCTCCTCCCTTCGCTCGCTTCCAGCTCGGCCCGGCAGGGGG
CGCGCCGGGCCCAACGCCACGTCACCGCCCAGCAGCCCTCCCGATTGGCGGGCGGGGCGGCTATAAAGGGAGGGCGCAGG
CGGCGCCCGGATCTCTTCCGCCGCCATTTTAAATCCAGCTCCATACAACGCTCCGCCGCCGCTGCTGCCGCGACCCGGAC
TGCGCGCCAGCACCCCCCGGCCGACAACTCCGCCGCCATGGAGGACATGAACGAGTACAGCAACATAGAGGAGTTCGCAG
AGGGATCCAAGATCAACGCGAGCAAGAATCAGCAGGATGACGGTAAAATGTTTATTGGAGGCTTGAGCTGGGATACAAGC
AAGAAAGATCTGACTGAATATTTGTCTCGATTTGGGGAAGTTGTAGACTGTACAATTAAGACAGATCCAGTGACTGGAAG
ATCAAGAGGATTTGGATTTGTGCTTTTCAAAGATGCTGCTAGTGTTGATAAGGTTTTGGAACTGAAAGAACACAAACTGG
ATGGCAAGTTGATAGACCCCAAAAGGGCCAAAGCTTTAAAAGGGAAAGAACCCCCAAAAAAGGTTTTTGTGGGTGGATTG
AGCCCAGATACTTCCGAAGAACAAATTAAAGAATATTTTGGAGCCTTTGGAGAGATTGAAAATATTGAACTTCCCATGGA
TACAAAAACAAACGAAAGAAGAGGATTTTGTTTTATTACCTATACAGACGAAGAGCCAGTAAAGAAATTGTTAGAAAGCA
GATATCATCAAATTGGTTCTGGGAAGTGTGAAATCAAAGTTGCACAACCCAAAGAGGTATATAGGCAGCAACAGCAACAA
CAAAAAGGAGGAAGAGGTGCTGCAGCTGGTGGACGAGGTGGTACTAGGGGTCGTGGACGAGGTCAGGGCCAAAACTGGAA
CCAAGGATTTAATAACTATTATGATCAAGGATATGGAAATTACAATAGTGCCTATGGTGGTGATCAAAACTATAGTGGCT
ATGGCGGCTATGATTATACTGGGTATAACTATGGGAACTATGGATATGGACAGGGATATGCAGACTACAGTGGCCAACAG
AGCACTTACGGCAAGGCGTCTAGAGGGGGTGGCAATCACCAAAACAATTACCAGCCATACTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 224 .53 RPM
SRP017611_brain 111 .78 RPM
SRP017611_kidney 75 .55 RPM
SRP017611_liver 57 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000000241 within_species_paralog 2 retrogenes
retro_cfam_408, retro_cfam_412,
Canis familiaris ENSCAFG00000006580 other_paralog 16 retrogenes
retro_cfam_1080, retro_cfam_1081, retro_cfam_1170, retro_cfam_1323, retro_cfam_1616, retro_cfam_1844, retro_cfam_2017, retro_cfam_2128, retro_cfam_360, retro_cfam_564, retro_cfam_702, retro_cfam_803, retro_cfam_839, retro_cfam_855, retro_cfam_892, retro_cfam_937,
Canis familiaris ENSCAFG00000013497 other_paralog 12 retrogenes
retro_cfam_1214, retro_cfam_1326, retro_cfam_1388, retro_cfam_1548, retro_cfam_1690, retro_cfam_1816, retro_cfam_265, retro_cfam_272, retro_cfam_400, retro_cfam_625, retro_cfam_65, retro_cfam_836,
Choloepus hoffmanni ENSCHOG00000000160 ortholog_one2many 8 retrogenes
retro_chof_115, retro_chof_1470, retro_chof_2108, retro_chof_2370, retro_chof_533, retro_chof_59, retro_chof_741, retro_chof_890,
Choloepus hoffmanni ENSCHOG00000003275 ortholog_one2many 2 retrogenes
retro_chof_1578, retro_chof_18,
Dipodomys ordii ENSDORG00000000968 ortholog_one2one 1 retrogene
retro_dord_145,
Loxodonta africana ENSLAFG00000008612 ortholog_one2one 1 retrogene
retro_lafr_650,
Myotis lucifugus ENSMLUG00000014452 possible_ortholog 2 retrogenes
retro_mluc_1140, retro_mluc_1761,
Mustela putorius furo ENSMPUG00000014753 possible_ortholog 2 retrogenes
retro_mputfur_1359, retro_mputfur_600,
Nomascus leucogenys ENSNLEG00000008636 ortholog_one2one 1 retrogene
retro_nleu_673,
Otolemur garnettii ENSOGAG00000002501 possible_ortholog 4 retrogenes
retro_ogar_2717, retro_ogar_2791, retro_ogar_437, retro_ogar_693,
Rattus norvegicus ENSRNOG00000002270 possible_ortholog 1 retrogene
retro_rnor_1365,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1086 93.97 74.76
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Download FASTA sequences of all ENSCAFG00000008940 retrocopies