Parental gene:

ENSCHOG00000000160

Aliases:None
Description:None
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_119110:4023..7141(-)


>ENSCHOG00000000160
ATAGAGGAATTCGCAGAAGAATCCAAGATTAACGCGAGCAAGAATCAGCAGGATGACGGTAAAATGTTTATTGGAGGCTT
GAGCTGGGATACAAGCAAGAAAGATCTGACTGAATATTTGTCTCGATTTGGAGAGGTTGTAGACTGCACAATTAAAACAG
ATCCAGTCACTGGAAGATCAAGAGGATTTGGATTTGTGCTTTTCAAAGATGCTGCTAGTGTTGATAAGGTTTTGGAACTG
AAAGAACACAAACTGGATGGCAAATTGATAGACCCCAAAAGGGCGAAGGCTTTAAAAGGGAAAGAACCCCCTAAAAAAGT
TTTTGTGGGTGGATTGAGCCCAGATACTTCTGAAGAGCAAATAAAAGAATATTTTGGAGCATTTGGAGAGATCGAAAATA
TTGAACTTCCCATGGATACAAAAACAAATGAAAGAAGAGGATTTTGTTTTATCACTTATACAGATGAAGAGCCAGTAAAG
AAATTATTAGAAAGCAGATACCATCAAATTGGTTCTGGAAAGTGTGAAATCAAAGTTGCACAACCCAAAGAGGTATATAG
GCAGCAACAGCAACAACAGAAAGGAGGAAGAGGAGCTGCAGCTGCTGGACGAGGTGGTACAAGGGATCGAGGACGAGGTC
AGGGCCAAAACTGGAACCAAGGATTTAACAACTATTACGATCAAGGATACGGAAATTACAATAGTGCCTATGGTGGTGAT
CAGAACTATAGTGGCTATGGCGGATATGATTATACTGGGTATAACTATGGGAACTATGGATATGGACAGGGATATACAGA
CTACAGTGGCCAACAGAGCACATATGGCAAGGCATCTCGAGGGGGTGGCAATCACCAAAACAATTACCAGCCATACTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014804 possible_ortholog 2 retrogenes
retro_btau_1827, retro_btau_461,
Canis familiaris ENSCAFG00000008940 ortholog_one2many 1 retrogene
retro_cfam_1086,
Choloepus hoffmanni ENSCHOG00000003275 within_species_paralog 2 retrogenes
retro_chof_1578, retro_chof_18,
Choloepus hoffmanni ENSCHOG00000013832 within_species_paralog 15 retrogenes
retro_chof_1060, retro_chof_1191, retro_chof_1413, retro_chof_1460, retro_chof_1507, retro_chof_2062, retro_chof_2135, retro_chof_2235, retro_chof_2263, retro_chof_2404, retro_chof_2425, retro_chof_2473, retro_chof_2574, retro_chof_499, retro_chof_853,
Cavia porcellus ENSCPOG00000015619 possible_ortholog 5 retrogenes
retro_cpor_1110, retro_cpor_1318, retro_cpor_264, retro_cpor_274, retro_cpor_567,
Dipodomys ordii ENSDORG00000000968 ortholog_one2many 1 retrogene
retro_dord_145,
Equus caballus ENSECAG00000022692 possible_ortholog 1 retrogene
retro_ecab_1082,
Loxodonta africana ENSLAFG00000008612 ortholog_one2many 1 retrogene
retro_lafr_650,
Microcebus murinus ENSMICG00000001445 possible_ortholog 4 retrogenes
retro_mmur_1016, retro_mmur_1570, retro_mmur_1572, retro_mmur_557,
Myotis lucifugus ENSMLUG00000014452 possible_ortholog 2 retrogenes
retro_mluc_1140, retro_mluc_1761,
Mustela putorius furo ENSMPUG00000014753 possible_ortholog 2 retrogenes
retro_mputfur_1359, retro_mputfur_600,
Nomascus leucogenys ENSNLEG00000008636 ortholog_one2many 1 retrogene
retro_nleu_673,
Oryctolagus cuniculus ENSOCUG00000013805 possible_ortholog 1 retrogene
retro_ocun_505,
Otolemur garnettii ENSOGAG00000002501 possible_ortholog 4 retrogenes
retro_ogar_2717, retro_ogar_2791, retro_ogar_437, retro_ogar_693,
Ochotona princeps ENSOPRG00000007178 possible_ortholog 3 retrogenes
retro_opri_1075, retro_opri_623, retro_opri_703,
Procavia capensis ENSPCAG00000011543 possible_ortholog 1 retrogene
retro_pcap_366,
Rattus norvegicus ENSRNOG00000002270 possible_ortholog 1 retrogene
retro_rnor_1365,
Sorex araneus ENSSARG00000009961 possible_ortholog 1 retrogene
retro_sara_421,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_chof_59 98.16 93.15
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2. retro_chof_115 79.09 89.04
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3. retro_chof_533 90.80 84.59
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4. retro_chof_741 80.09 77.05
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5. retro_chof_890 74.72 89.04
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6. retro_chof_1470 64.50 56.85
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7. retro_chof_2108 74.63 91.44
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8. retro_chof_2370 71.71 68.49
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Download FASTA sequences of all ENSCHOG00000000160 retrocopies