RetrogeneDB ID:

retro_mluc_1140

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429798:8410618..8411611(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000014452
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1140
CTCTTCCACTGCCATTTTAAATCCGGCTCCGTACAACGCTCTGCCACTACTGCTGCGACCCAAACTGCATGCCAGCACCC
ACAGGCTGACAAGGCCGCTGCCATGGAGGACATGAATGAGAACAGCAACACGGAGGAGTTCGCAGAGGGATCCAAGATCA
ACGCGAGCAAGAATCAGCAGGATGATGGTAAAATGTTTACTGGAGGCTTGATCTGGGAAACAAGCAAGAAAGATCTGACT
GAATATTTGTCTCAATTTTGGGGAAGTTGTAGACTGCACAATTAAAATAGATCCAGTAACTAGACGATCAAGAGGATTTG
GATTTGTGCTTTTCAAAGATGCTGCTAGTGTTGATACGGTTTTGGAACTGAAGAAACACAAACTGGATGGCAAACGGATA
GACCCCCAAAAGGGCAAACGCTTTAAAAGGGAAGGAACCCCCCAAAAAGGTTTTTGTGGGTGGATTGAGCCCAGATACTT
CTGAAGAACAAATTAAAGAATATTTTGGAGCCTTTTGGAGAGATTGAAAATATTGAACTTCCCATGGATACAAAAACAAA
TGAGAGAAGAGGTTTTTGTTTTATCACATATACAGATGAGGAGCCAGTAAAGAAATTGTTAGAAAGCAGATATCATCAAA
TTGGTTCTGGGAAGTGTGAAATCAAAGTTGCCCAACCCAAAGAGGTATATAGACAGCAACAGCAATAACAAAAGGGAGGA
TGAGGTGCTGAAGCTGGTGGAAGAGGTGGTACTAGGGTTCGAGGCCGAGGTCAGGGCCAAAATTGGAACCAAGGATTTAA
TAACTATTATGATCAAGGATATTACAATAGTGCCTATGGTGGTGATCAAAACTATAGTGGCTATGATTATACGGGGTATA
ACTATGGGACCTATGGATATGGACAGGGATATGCAGACTACAGTGGCCAACAGAGCACTTATGGCAAGGCATTTCAAGGG
TGAGGCAATCACCAAAATAATTATCAGCCACAC

ORF - retro_mluc_1140 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.76 %
Parental protein coverage: 79.95 %
Number of stop codons detected: 3
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalLFRRHFKSGSIQRSAAAAATRTARQHPPADNAAAMEDVNEYSNTEEFAEGSKINASKNQQDDGKMFIGGL
LF..HFKSGS.QRSA..AAT.TA.QHP.AD.AAAMED.NE.SNTEEFAEGSKINASKNQQDDGKMF.GGL
RetrocopyLFHCHFKSGSVQRSATTAATQTACQHPQADKAAAMEDMNENSNTEEFAEGSKINASKNQQDDGKMFTGGL
ParentalSWDTSKKDLTEYLSRF-GEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDP-KRA
.W.TSKKDLTEYLS.F.GEVVDCTIK.DPVT.RSRGFGFVLFKDAASVD.VLELK.HKLDGK.IDP.KRA
RetrocopyIWETSKKDLTEYLSQF>GEVVDCTIKIDPVTRRSRGFGFVLFKDAASVDTVLELKKHKLDGKRIDP>KRA
ParentalKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA-FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE
.ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA.FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE
RetrocopyNALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA>FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE
ParentalSRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYN
SRYHQIGSGKCEIKVAQPKEVYRQQQQ.QKGG.GA.AGGRGGTR.RGRGQGQNWNQGFNNYYDQGY..YN
RetrocopySRYHQIGSGKCEIKVAQPKEVYRQQQQ*QKGG*GAEAGGRGGTRVRGRGQGQNWNQGFNNYYDQGY--YN
ParentalSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY
SAYGGDQNYSGY...DYTGYNYG.YGYGQGYADYSGQQSTYGKA..G.GNHQNNYQP.
RetrocopySAYGGDQNYSGY---DYTGYNYGTYGYGQGYADYSGQQSTYGKAFQG*GNHQNNYQPH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_1140 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 47 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000148042 retrocopies
retro_btau_1827, retro_btau_461,
Canis familiaris ENSCAFG000000089401 retrocopy
retro_cfam_1086,
Choloepus hoffmanni ENSCHOG000000001608 retrocopies
retro_chof_115, retro_chof_1470, retro_chof_2108, retro_chof_2370, retro_chof_533, retro_chof_59, retro_chof_741, retro_chof_890,
Choloepus hoffmanni ENSCHOG000000032752 retrocopies
retro_chof_1578, retro_chof_18,
Cavia porcellus ENSCPOG000000156195 retrocopies
retro_cpor_1110, retro_cpor_1318, retro_cpor_264, retro_cpor_274, retro_cpor_567,
Dipodomys ordii ENSDORG000000009681 retrocopy
retro_dord_145,
Equus caballus ENSECAG000000226921 retrocopy
retro_ecab_1082,
Loxodonta africana ENSLAFG000000086121 retrocopy
retro_lafr_650,
Microcebus murinus ENSMICG000000014454 retrocopies
retro_mmur_1016, retro_mmur_1570, retro_mmur_1572, retro_mmur_557,
Myotis lucifugus ENSMLUG000000006483 retrocopies
retro_mluc_2503, retro_mluc_342, retro_mluc_82,
Myotis lucifugus ENSMLUG000000033802 retrocopies
retro_mluc_2024, retro_mluc_2138,
Myotis lucifugus ENSMLUG000000075781 retrocopy
retro_mluc_34,
Myotis lucifugus ENSMLUG00000014452 2 retrocopies
retro_mluc_1140 , retro_mluc_1761,
Mustela putorius furoENSMPUG000000147532 retrocopies
retro_mputfur_1359, retro_mputfur_600,
Nomascus leucogenys ENSNLEG000000086361 retrocopy
retro_nleu_673,
Oryctolagus cuniculus ENSOCUG000000138051 retrocopy
retro_ocun_505,
Otolemur garnettii ENSOGAG000000025014 retrocopies
retro_ogar_2717, retro_ogar_2791, retro_ogar_437, retro_ogar_693,
Ochotona princeps ENSOPRG000000071783 retrocopies
retro_opri_1075, retro_opri_623, retro_opri_703,
Procavia capensis ENSPCAG000000115431 retrocopy
retro_pcap_366,
Rattus norvegicus ENSRNOG000000022701 retrocopy
retro_rnor_1365,
Sorex araneus ENSSARG000000099611 retrocopy
retro_sara_421,


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