Parental gene:

UBE2I, ENSCAFG00000031449

Aliases:None
Description:ubiquitin-conjugating enzyme E2I [Source:HGNC Symbol;Acc:12485]
Organism:Dog (Canis familiaris)
Coordinates:6:39442792..39451397(-)


>ENSCAFG00000031449
ATGTCGGGGATCGCTCTCAGCAGACTCGCCCAGGAGAGGAAAGCCTGGAGAAAGGACCACCCGTTTGGCTTTGTGGCTGT
CCCGACAAAGAATCCCGACGGCACGATGAACCTCATGAACTGGGAGTGTGCCATTCCAGGGAAGAAAGGGACTCCCTGGG
AAGGAGGCTTGTTTAAACTACGGATGCTTTTCAAAGACGATTATCCATCCTCACCCCCAAAATGTAAATTTGAGCCACCG
CTGTTTCACCCGAACGTGTACCCTTCGGGCACAGTGTGCCTGTCCATCCTCGAGGAGGACAAGGACTGGAGGCCAGCCAT
CACGATTAAGCAGGTAGGGCGCCAGGGTGCGCGGGGCCAGACGACTGTGGTCTCGCTGCAAAGCCGAGGCCGACGTCCTG
GGACAGTTTGCCTTTCAAACCCCTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 23 .94 RPM
SRP017611_brain 18 .97 RPM
SRP017611_kidney 13 .08 RPM
SRP017611_liver 7 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007721 ortholog_one2many 1 retrogene
retro_amel_1843,
Bos taurus ENSBTAG00000038866 ortholog_one2one 1 retrogene
retro_btau_1470,
Callithrix jacchus ENSCJAG00000013249 ortholog_one2one 1 retrogene
retro_cjac_2914,
Cavia porcellus ENSCPOG00000010431 ortholog_one2one 1 retrogene
retro_cpor_156,
Equus caballus ENSECAG00000015831 ortholog_one2one 1 retrogene
retro_ecab_350,
Felis catus ENSFCAG00000027291 ortholog_one2one 2 retrogenes
retro_fcat_1994, retro_fcat_873,
Loxodonta africana ENSLAFG00000018318 ortholog_one2one 1 retrogene
retro_lafr_541,
Myotis lucifugus ENSMLUG00000008229 ortholog_one2one 2 retrogenes
retro_mluc_1112, retro_mluc_1327,
Macaca mulatta ENSMMUG00000003654 ortholog_one2one 1 retrogene
retro_mmul_981,
Mustela putorius furo ENSMPUG00000015763 ortholog_one2one 1 retrogene
retro_mputfur_1234,
Mus musculus ENSMUSG00000015120 ortholog_one2one 4 retrogenes
retro_mmus_1341, retro_mmus_1997, retro_mmus_3182, retro_mmus_3419,
Nomascus leucogenys ENSNLEG00000008525 ortholog_one2one 1 retrogene
retro_nleu_1298,
Otolemur garnettii ENSOGAG00000001428 ortholog_one2one 4 retrogenes
retro_ogar_2367, retro_ogar_2731, retro_ogar_548, retro_ogar_641,
Rattus norvegicus ENSRNOG00000017907 ortholog_one2one 11 retrogenes
retro_rnor_1051, retro_rnor_1448, retro_rnor_1764, retro_rnor_1913, retro_rnor_2036, retro_rnor_2147, retro_rnor_2301, retro_rnor_2423, retro_rnor_2927, retro_rnor_708, retro_rnor_832,
Sarcophilus harrisii ENSSHAG00000007034 ortholog_one2one 1 retrogene
retro_shar_218,
Sus scrofa ENSSSCG00000021560 ortholog_one2one 1 retrogene
retro_sscr_319,
Ictidomys tridecemlineatus ENSSTOG00000010233 ortholog_one2one 3 retrogenes
retro_itri_1341, retro_itri_1459, retro_itri_1601,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_541 70.87 70.92
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2. retro_cfam_1363 69.90 70.92
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3. retro_cfam_1991 94.55 78.01
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4. retro_cfam_2090 62.73 77.30
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Download FASTA sequences of all ENSCAFG00000031449 retrocopies