Parental gene: | PTMA, ENSCAFG00000032596 |
| Aliases: | None |
| Description: | Canis lupus familiaris prothymosin, alpha (PTMA), mRNA. [Source:RefSeq mRNA;Acc:NM_001252198] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 25:43563144..43567987(+) |
>ENSCAFG00000032596
ATGTCAGACGCGGCCGTGGACACCAGCTCCGAGATCACCACCAAGGACTTAAAGGAGAAGAAGGAAGTTGTGGAGGAGGC
AGAGAATGGAAGAGACGCGCCTGCTAATGGGAACGCTGAGAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAG
ATGAAGAAGAGGAGGAAGGCGGGGAGGAAGAAGAGGAGGAGGAGGAAGGTGATGGAGAGGAAGAGGATGGAGATGAAGAT
GAGGAGGCCGAGGCAGCTACGGGCAAACGGGCAGCTGAAGACGATGAGGATGACGACGTCGACACCAAGAAGCAGAAGAC
TGATGAGGATGACTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012049_cerebellum | 592 .31 RPM |
| SRP017611_brain | 212 .06 RPM |
| SRP017611_kidney | 278 .28 RPM |
| SRP017611_liver | 163 .45 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000002549 | ortholog_many2many | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000013611 | possible_ortholog | 9 retrogenes | |
| Felis catus | ENSFCAG00000004780 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000187514 | ortholog_one2many | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000009874 | ortholog_many2many | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000002628 | possible_ortholog | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000012140 | ortholog_many2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000026238 | possible_ortholog | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000014135 | ortholog_many2many | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000018584 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000023690 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_78 | 87.39 | 100.00 | Please wait, loading  |
Please wait, loading |
Please wait, loading |
| 2. | retro_cfam_113 | 91.07 | 100.00 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 3. | retro_cfam_282 | 59.81 | 95.50 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 4. | retro_cfam_1570 | 52.31 | 56.76 | Please wait, loading |
Please wait, loading |
Please wait, loading |
Download FASTA sequences of all ENSCAFG00000032596 retrocopies