Parental gene:

PTMA, ENSSSCG00000023690

Aliases:None
Description:prothymosin, alpha [Source:HGNC Symbol;Acc:9623]
Organism:Pig (Sus scrofa)
Coordinates:GL894918.2:6122..7597(-)


>ENSSSCG00000023690
AAGGACTTAAAAGAGAAGAAGGAAGTCGTGGAGGAGGCGGAGAATGGGAGAGAGGCCCCTGCTAATGGCAATGCTAATGA
GGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGATGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAGGAGG
AAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAGGCTGAGGCAGCTACAGGCAAACGGGCAGCTGAAGATGAT
GAGGACGACGATGTGGACACCAAGAAGCAGAAGACCGATGAGGATGACTAG

Library Parental gene expression (RPM)
SRP014902_placenta 109 .10 RPM
SRP014902_testis 129 .42 RPM
SRP018288_heart 45 .26 RPM
SRP018288_kidney 178 .10 RPM
SRP018288_liver 199 .25 RPM
SRP018288_lung 169 .74 RPM
SRP018856_adipose 775 .85 RPM
SRP035408_brain 660 .49 RPM
SRP035408_liver 873 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002549 ortholog_one2many 2 retrogenes
retro_btau_1034, retro_btau_143,
Canis familiaris ENSCAFG00000032596 ortholog_one2many 4 retrogenes
retro_cfam_113, retro_cfam_1570, retro_cfam_282, retro_cfam_78,
Callithrix jacchus ENSCJAG00000013611 possible_ortholog 9 retrogenes
retro_cjac_1484, retro_cjac_1976, retro_cjac_2318, retro_cjac_2507, retro_cjac_2611, retro_cjac_3035, retro_cjac_3151, retro_cjac_421, retro_cjac_647,
Felis catus ENSFCAG00000004780 ortholog_one2one 1 retrogene
retro_fcat_1682,
Homo sapiens ENSG00000187514 ortholog_one2one 6 retrogenes
retro_hsap_1863, retro_hsap_2690, retro_hsap_3447, retro_hsap_4198, retro_hsap_4288, retro_hsap_4787,
Gorilla gorilla ENSGGOG00000009874 ortholog_one2many 4 retrogenes
retro_ggor_1551, retro_ggor_2149, retro_ggor_2981, retro_ggor_952,
Myotis lucifugus ENSMLUG00000002628 possible_ortholog 2 retrogenes
retro_mluc_131, retro_mluc_26,
Macaca mulatta ENSMMUG00000012140 ortholog_one2many 1 retrogene
retro_mmul_196,
Mus musculus ENSMUSG00000026238 possible_ortholog 4 retrogenes
retro_mmus_3135, retro_mmus_3136, retro_mmus_414, retro_mmus_55,
Nomascus leucogenys ENSNLEG00000014135 ortholog_one2many 2 retrogenes
retro_nleu_30, retro_nleu_96,
Rattus norvegicus ENSRNOG00000018584 possible_ortholog 1 retrogene
retro_rnor_69,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_895 62.38 100.00
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Download FASTA sequences of all ENSSSCG00000023690 retrocopies