RetrogeneDB ID: | retro_mmus_3136 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 8:55552812..55553098(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ptma | ||
Ensembl ID: | ENSMUSG00000026238 | ||
Aliases: | Ptma, Thym | ||
Description: | prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803] |
Percent Identity: | 61.86 % |
Parental protein coverage: | 85.59 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNAQNEENGEQEADNEVDEEEEEGGEE-EEEEEE |
M.D.AVDT.SEIT..DLKE.KEVVEEAENGR..PANGN....ENGEQ.ADNEVD.EEEEGGEE.E...EE | |
Retrocopy | MPDRAVDTGSEITIEDLKEEKEVVEEAENGREEPANGNG-D*ENGEQDADNEVDVEEEEGGEEVEKKNEE |
Parental | GDGEEEDGD-EDEEAEAPTGKRVAEDD |
.....E.G...D.E.E....KR...D. | |
Retrocopy | TEA*REAGS>KDDEDEDVDRKR*KTDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 66 .05 RPM |
SRP007412_cerebellum | 0 .00 RPM | 120 .54 RPM |
SRP007412_heart | 0 .00 RPM | 97 .94 RPM |
SRP007412_kidney | 0 .00 RPM | 233 .71 RPM |
SRP007412_liver | 0 .00 RPM | 95 .06 RPM |
SRP007412_testis | 0 .00 RPM | 65 .54 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002549 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000032596 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000013611 | 9 retrocopies | |
Felis catus | ENSFCAG00000004780 | 1 retrocopy | |
Homo sapiens | ENSG00000187514 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000009874 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000002628 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000012140 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026238 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014135 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000018584 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000023690 | 1 retrocopy |