Parental gene:

RSL1D1, ENSCHOG00000010827

Aliases:None
Description:ribosomal L1 domain containing 1 [Source:HGNC Symbol;Acc:24534]
Organism:Sloth (Choloepus hoffmanni)
Coordinates:GeneScaffold_6336:2477..12458(-)


>ENSCHOG00000010827
ATGGAGGTCTCCACTCCCACCCTGGCTACAACTTCGACTCCAGAAACCCCTACGGCACCCGAGCGGCAGTCGCTGGTGAA
CAAAGCCCAGATTAGAAAGGCGTTGGCAGCTTTGTTGGAAAATTCCAAGTCCAGGAAAAACGCTGATGACTTGCTTTTGA
ATGAGAAAGAAAATTTATTTTTAATGGTGGTATTATGGAAAATTCCCAGTAAAGAACTGAGGGTCAGATTGTCTTTGCCT
TATAGTATTCGGTCAGATTTAGCAGAAGTCTGTTTATTTACCAAGGATGAACCCGATTTAACTCCTGAAAAGACAGAACA
TTTCTATAGAAGTCTTTTGAACAAGCATAAAATTAACACTATTTCTCAGATTATCCCCCTCCGAACTTTAAAAAAGGAAT
ATAAACCCTATGAAGCCAAGCTCCGCCTCTTGGGTAGTTTTGACTTCTTCCTTACTGATGCAAGAATTAGGCGGCTTTTA
CCCTCCATCATAGGGAAACATTATCTCAGAAAGAAAGTTCCGGTATCTGTAAACCTTCTGGCCAAGAATTTATCAAAAGA
GATCAATGGATCTATAGGTGGGACTGTCTTAAACATCTCTAAAACTGGTTCCTGCAGTACTATTCGCATTGGTCACACTG
GAATGAAGTTGCAGCACATCCTTCAGAATGTCGTTGCTGTGGCAAAAGGGCTTTCGGAAAAATTGCCAGAGAAGTGGGCA
AGTGTGAAACTTTTATACCTAAAAACTGAGAAATCGGTTGCCCTTCCAGTCTTTTCTTCGTTTAAGAGCAATTGGGATGA
TGCTAGAGGAGTATCCCTTCCTGGTCAGAAGAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGTGCAAACATGTGCCATAGTAAAGAAAACTCCAAAAAATAGTCCAGGTCCCAGCACACCTCTAGGGAAGAAG
AGAAAGGCGTCTGCAGCTTTGAAGACCCCTGGAGCTGCAAAGCAAGATACCCCAGGTAAAGGCCCAGGAAAGAAGCCAAG
AATCAAAGAGACCGAGAAGGAAATCAACTCTTCACTGGGGAAAAAAGACCTAAGACAGACTCCAAAAAAGCCAGAGGCTA
AATTCTTTGCTACTCCTAGTAAATCTGCCAAAAAAGTGCCCCAGACCCCCAAGCAGTGGCCCCTCAAACCCAAAATGTTG
TCACAGACAAACTAA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018865 ortholog_one2one 2 retrogenes
retro_cfam_1937, retro_cfam_691,
Callithrix jacchus ENSCJAG00000008375 ortholog_one2many 1 retrogene
retro_cjac_2154,
Cavia porcellus ENSCPOG00000010630 ortholog_one2one 3 retrogenes
retro_cpor_1262, retro_cpor_276, retro_cpor_822,
Loxodonta africana ENSLAFG00000013664 ortholog_one2one 1 retrogene
retro_lafr_364,
Myotis lucifugus ENSMLUG00000000784 ortholog_one2one 1 retrogene
retro_mluc_1309,
Monodelphis domestica ENSMODG00000029494 ortholog_one2many 2 retrogenes
retro_mdom_1240, retro_mdom_573,
Otolemur garnettii ENSOGAG00000015151 ortholog_one2one 1 retrogene
retro_ogar_2604,
Rattus norvegicus ENSRNOG00000048608 ortholog_one2many 1 retrogene
retro_rnor_2771,
Sarcophilus harrisii ENSSHAG00000016705 ortholog_one2one 1 retrogene
retro_shar_836,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_chof_852 91.82 55.37
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2. retro_chof_1617 98.91 56.82
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Download FASTA sequences of all ENSCHOG00000010827 retrocopies