Parental gene:

ENSRNOG00000048608

Aliases:None
Description:None
Organism:Rat (Rattus norvegicus)
Coordinates:10:3313218..3324552(+)


>ENSRNOG00000048608
ATGAAGTGCTTAGCGTCCGAGTCTCCCGATGCCTCGGCCGCTACGGCGACCACCACCGAGGTGCAAGCGGAACCGACCGC
TCTTGAACAGCTGGACAGAGAGCAGATAAGAAAGGCAGTAGAAGTTCTGTTTGATAACTCCAAGTCCAGAAAAAATAATG
AATTGCTGTTGAATGGGAGTGAAAATCTGTTTTTAATGGTGATACTATGGAAAATTCCAAAGAAAGAACTTAGGATCAGA
GTGTCTTTGCCTCATAGCATCCTCTCAGAATCCTCAGAAGTCTGTCTGTTTACCAAAGATGAATGTGATTCACCTGAACA
GACAGAGGGTTTCTATAAAAAGCTTTTGAAAAAGCATGGAGTAAACACTATCTCTCAGATTATCCCCTTTAAGACGTTAA
AAACAGAATATAAAGCCTATGAAGCCAAGCTCCGCCTCCTGGGTAGCTTTGATGTCTTTATTGCTGATGAACGAATCCGA
CGGCATTTGCCCACACACATAGGAAGGCATTTCTATCAGAGGAAGAAAGTTCCAGTATCTGTAAACCTTCTGGCAAAGAA
TCTGTCCAAAGAGATTAACCGAACTATCACAGGGACCGTCTTAAACATCTCTAAGCGTGGTTCTTGCAGTACTATCCGTA
TTGGTCACACTGGAATGGAGATTCAGCACATCATTGAAAACATCCTGACTGTCTCAGAAATGCTTTCAGAAAAATTGCCA
GAGAAATGGCAGAGTGTGAAACTCCTATTCCTGAAAACTGAGAAGTCGGTTTCCCTTCCTATCTTTTCCTCGTTTGTCAC
ATCTCAGGACGAAAACAGCGCTTCCTTCCGTGGTCTGAAGAAACAGGAACCAAAGAAAAGAAGGAAGCATGAAAAACAAA
AGTTGAAGAAGGAAAGCAAAATGTTAAAGAAGAAATCCAAGAAGGCTACATCTCTTTTAACTCAAGGTGGCTTAGTTAGC
AGTGCTCCAGCAAAGGGCCCGGGAGCCCAGAAGAAAAGGACCAGCAAGGCCAGCACACAGCCGAAAGTTACAGAGGAGTA
TGAAGAAACAATTCCCCAACTGGTACCAATAGGAGAAACTCCGGATAAAGAAAATATGAAGATGCAAGAAAATATCACAG
GGAAGAAGTCTCCAAAATCGAAGTCTGATCCAAGAACCCCTCAGGGTAAAAAAAGGAAGGCCTTACCGGCTACAGAGACT
CCAGAAGCCTCAGATCCTGGGATCTCAGGGAAGAAACAAAAAAAGGATGTGCGGGAATTCAGAAAGCCAGGGGCCAAGTC
CTTCTCTACTCCCATGAAATCTGGAAAGAAAGCTTCCAACACTCCCAGAGACAAAAAAGGCTGCCCACTCAAACTAGAAT
TAGTGTGGCATAAAAGACATCAGAGTTAA

Library Parental gene expression (RPM)
SRP017611_brain 4 .46 RPM
SRP017611_kidney 4 .95 RPM
SRP017611_liver 2 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018865 ortholog_one2many 2 retrogenes
retro_cfam_1937, retro_cfam_691,
Choloepus hoffmanni ENSCHOG00000010827 ortholog_one2many 2 retrogenes
retro_chof_1617, retro_chof_852,
Callithrix jacchus ENSCJAG00000008375 ortholog_many2many 1 retrogene
retro_cjac_2154,
Cavia porcellus ENSCPOG00000010630 ortholog_one2many 3 retrogenes
retro_cpor_1262, retro_cpor_276, retro_cpor_822,
Loxodonta africana ENSLAFG00000013664 ortholog_one2many 1 retrogene
retro_lafr_364,
Myotis lucifugus ENSMLUG00000000784 ortholog_one2many 1 retrogene
retro_mluc_1309,
Monodelphis domestica ENSMODG00000029494 ortholog_many2many 2 retrogenes
retro_mdom_1240, retro_mdom_573,
Otolemur garnettii ENSOGAG00000015151 ortholog_one2many 1 retrogene
retro_ogar_2604,
Sarcophilus harrisii ENSSHAG00000016705 ortholog_one2many 1 retrogene
retro_shar_836,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2771 78.93 59.74
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Download FASTA sequences of all ENSRNOG00000048608 retrocopies