Parental gene:

ENSCJAG00000008375

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:15307676..15323146(+)


>ENSCJAG00000008375
GCACCTTCACGAGGTGAAAGCAAAATGGAGGACTCGGCCGCGACTGCAACCTCCACCTCGACTCCAGCTGCCCCGACAGC
ACGGAAGCAGCTGGACAAAGAGCAGGTTAGAAAGGCATTGGACGCTCTCTTGACACATTGCAAATCCAGGAAGAACGATT
ATGGGTTGCTTTTGAATGAGAGTGAAAATGTATTTTTAATGGTGGTATTATGGAAAATTCCAAGTAAAGAACTGAGGGTC
AGATTGCCCTTACCTCATGGTATTCGATCGGATTTAGAAGATATCTGTTTATTTACGAAGGACGAACCCAATTCAACTCC
TGAAAAGACAGAACAGTTCTATAGAAAGCTTTTAAACAAGCATGGAATTAAAACCATTTCTCAGATTATCCCCTTCCAAA
CTCTAAAGAAGGAATATAAACCCTTTGAAGCCAAGCTCCGCCTTCTGAGCACTTTTGACTTCTTCCTTACTGATGCCAGA
ATTAGGCGGCTCTTACCCTCACTCATTGGGAGACATTTCTATCAAAGAAAGAAAGTTCCAGTATCTGTAAACCTTCTGTC
CAAGAATTTATCAAGAGAGATCAATGACTGTATAGGTGGAACAGTCTTAAACATTTCTAAAAGTGGTTCTTGCAGTGCTA
TACGCGTTGGTCATGTTGGAATGCAGATTGAGCACATCATTGAAAACATTGTTGCTGTCACCAAAGGACTTTCAGAAAAA
TTGCCAGAGAAGTGGGAGAGCGTGAAACTCCTGTTTGTGAAAACTGAGAAATCGGCTGCTCTTCCCATCTTTTCCTCGTT
CGTCAGCAATTGGGATGAAGCCACCAAAAAATCTATGCTTAATAAGAAGAAAAAAGTTTTCAGTATTACTAATACTCGAG
CAAAAGAAGCTTTCGGAAGGAAAAAAAAAAATCAGCAGGCTAGCAAGGCTGCATCAGTCCTTAGTAAAGACACCGTGACA
CCTGAAGGTGGTGACGCTACAGTGGAGAAACCTGAATTGAAGAAGGAGCAGACCCCAGGACATGGGAAGAAAAAGCGTGG
CAAAGGAAAAGCTCAAGTTCAAGTGGCAAATGACTCCGAAGATGAAATTCCGCAGCTGGTACCAATAGGAAAGACTCCAG
CTAAGGAGAATGTAGAGATTCAAAAACATGCCACAGGAAAGAAGTCTCCAAAAAAGAGCCCTATTCCCAGCACACCTCGT
GGGAAGAAAAGAAAGGCCTTGCCAGCATCTGAGACCCCAAAAGCTGCAGAATCTGAGACCCCAGGGAAAGGCCCACAGAA
GAAGCCAAAAATCAAAGAAGAGGCAGTGAAGGAAAAAAATCCTTCGCTGGGGAAAAAAGATGTGAGACAGACTCCTAAAA
AGCCAGAGGCCAAGTTCTTCACCACTCCTAGTAAATCTGCAAGAAAAACTTCCCACACCCCCAAAAAACGGCCCAAAAAA
ACCAAAGTACCCCTGTCAACCTAA

Library Parental gene expression (RPM)
SRP051959_spleen 26 .45 RPM
SRP051959_skeletal_muscle 38 .17 RPM
SRP051959_lymph_node 29 .57 RPM
SRP051959_lung 22 .97 RPM
SRP051959_liver 24 .97 RPM
SRP051959_kidney 24 .98 RPM
SRP051959_heart 21 .77 RPM
SRP051959_colon 18 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018865 ortholog_one2many 2 retrogenes
retro_cfam_1937, retro_cfam_691,
Choloepus hoffmanni ENSCHOG00000010827 ortholog_one2many 2 retrogenes
retro_chof_1617, retro_chof_852,
Cavia porcellus ENSCPOG00000010630 ortholog_one2many 3 retrogenes
retro_cpor_1262, retro_cpor_276, retro_cpor_822,
Loxodonta africana ENSLAFG00000013664 ortholog_one2many 1 retrogene
retro_lafr_364,
Myotis lucifugus ENSMLUG00000000784 ortholog_one2many 1 retrogene
retro_mluc_1309,
Monodelphis domestica ENSMODG00000029494 ortholog_many2many 2 retrogenes
retro_mdom_1240, retro_mdom_573,
Otolemur garnettii ENSOGAG00000015151 ortholog_one2many 1 retrogene
retro_ogar_2604,
Rattus norvegicus ENSRNOG00000048608 ortholog_many2many 1 retrogene
retro_rnor_2771,
Sarcophilus harrisii ENSSHAG00000016705 ortholog_one2many 1 retrogene
retro_shar_836,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2154 99.16 100.00
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Download FASTA sequences of all ENSCJAG00000008375 retrocopies